Wall clock time and date at job start Mon Mar 30 2020 02:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99888 * 2 1 4 4 H 1.48499 * 109.47136 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47058 * 120.00109 * 3 2 1 6 6 H 1.48497 * 109.47498 * 240.00285 * 3 2 1 7 7 C 1.37874 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00402 * 185.09571 * 7 2 1 9 9 C 1.50706 * 119.99767 * 5.10002 * 7 2 1 10 10 C 1.52995 * 115.54917 * 278.86564 * 9 7 2 11 11 N 1.46900 * 109.47149 * 294.57973 * 10 9 7 12 12 C 1.48125 * 111.00325 * 193.21421 * 11 10 9 13 13 C 1.55109 * 103.11243 * 215.74214 * 12 11 10 14 14 H 1.09000 * 111.06219 * 277.05442 * 13 12 11 15 15 O 1.42902 * 111.06074 * 153.05039 * 13 12 11 16 16 C 1.54960 * 101.26917 * 35.05404 * 13 12 11 17 17 O 1.43879 * 104.25102 * 324.01846 * 16 13 12 18 18 C 1.52999 * 117.49790 * 133.15655 * 9 7 2 19 19 C 1.53000 * 60.00194 * 252.51170 * 18 9 7 20 20 H 0.97000 * 120.00091 * 354.98664 * 1 2 3 21 21 H 1.09002 * 109.47196 * 54.58141 * 10 9 7 22 22 H 1.09005 * 109.47016 * 174.58097 * 10 9 7 23 23 H 1.09007 * 110.68874 * 334.14659 * 12 11 10 24 24 H 1.09000 * 110.69075 * 97.33463 * 12 11 10 25 25 H 0.96702 * 113.99785 * 186.66026 * 15 13 12 26 26 H 1.09002 * 110.47394 * 205.32839 * 16 13 12 27 27 H 1.08998 * 110.47898 * 82.70964 * 16 13 12 28 28 H 1.09002 * 117.49905 * 359.97438 * 18 9 7 29 29 H 1.09000 * 117.50107 * 145.02291 * 18 9 7 30 30 H 1.09000 * 117.49789 * 252.51175 * 19 18 9 31 31 H 1.08997 * 117.52029 * 107.47704 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6966 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0814 -1.1959 0.0825 9 6 1.2555 -2.4965 -0.1171 10 6 0.6387 -3.0215 1.1808 11 7 1.7083 -3.3643 2.1277 12 6 1.1804 -4.1612 3.2591 13 6 2.0197 -3.6609 4.4638 14 1 2.9816 -4.1715 4.5100 15 8 1.3005 -3.8131 5.6892 16 6 2.2003 -2.1640 4.1062 17 8 2.3341 -2.1557 2.6736 18 6 1.7830 -3.5277 -1.1168 19 6 0.4944 -2.7597 -1.4181 20 1 -0.4850 0.8368 0.0734 21 1 0.0002 -2.2529 1.6165 22 1 0.0440 -3.9097 0.9673 23 1 0.1216 -3.9543 3.4151 24 1 1.3450 -5.2254 3.0905 25 1 1.7420 -3.4218 6.4555 26 1 3.0999 -1.7657 4.5754 27 1 1.3246 -1.5909 4.4106 28 1 2.6715 -3.2638 -1.6905 29 1 1.6907 -4.5805 -0.8499 30 1 -0.4456 -3.3073 -1.3493 31 1 0.5351 -1.9906 -2.1893 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306281375.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:14 Heat of formation + Delta-G solvation = -33.680702 kcal Electronic energy + Delta-G solvation = -14869.694267 eV Core-core repulsion = 12346.369080 eV Total energy + Delta-G solvation = -2523.325187 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.14672 -38.32752 -36.90225 -33.96752 -33.48964 -30.92636 -27.76842 -26.95134 -23.83982 -22.87177 -22.56666 -20.84163 -18.70830 -17.93635 -17.45862 -16.59908 -16.56845 -15.86779 -15.34985 -15.12912 -14.61548 -14.44243 -14.15939 -13.54221 -13.19557 -13.07583 -12.82532 -12.76442 -12.36269 -12.13586 -11.97748 -11.43156 -11.27268 -11.01564 -10.70417 -10.36137 -9.99274 -9.42499 -8.01678 -6.06289 1.40655 1.41868 1.48861 2.05791 2.48347 2.80320 3.26870 3.53797 3.58480 3.68067 3.95559 4.14775 4.33153 4.46157 4.56746 4.61602 4.67946 4.72167 4.81732 4.88305 4.98655 5.07959 5.29259 5.61027 5.68007 5.84622 5.88486 6.17396 6.54133 6.74340 6.94698 7.57801 9.06747 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.029151 B = 0.011668 C = 0.009259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.292874 B = 2399.240670 C = 3023.423646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.023 3.977 3 Si 0.940 3.060 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.466 4.466 8 H 0.042 0.958 9 C 0.028 3.972 10 C 0.082 3.918 11 N -0.319 5.319 12 C -0.005 4.005 13 C 0.097 3.903 14 H 0.106 0.894 15 O -0.567 6.567 16 C -0.021 4.021 17 O -0.237 6.237 18 C -0.177 4.177 19 C -0.168 4.168 20 H 0.254 0.746 21 H 0.023 0.977 22 H 0.078 0.922 23 H 0.053 0.947 24 H 0.131 0.869 25 H 0.403 0.597 26 H 0.113 0.887 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.970 -7.358 8.925 11.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.176 4.176 3 Si 0.767 3.233 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.505 4.505 8 H 0.060 0.940 9 C 0.027 3.973 10 C -0.046 4.046 11 N -0.086 5.086 12 C -0.134 4.134 13 C 0.036 3.964 14 H 0.123 0.877 15 O -0.376 6.376 16 C -0.100 4.100 17 O -0.241 6.241 18 C -0.214 4.214 19 C -0.206 4.206 20 H 0.063 0.937 21 H 0.041 0.959 22 H 0.096 0.904 23 H 0.071 0.929 24 H 0.149 0.851 25 H 0.255 0.745 26 H 0.131 0.869 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.889 -7.619 8.079 11.474 hybrid contribution -0.285 1.924 0.823 2.112 sum 2.605 -5.694 8.902 10.884 Atomic orbital electron populations 1.70062 1.06787 1.26706 1.52097 1.25522 0.95455 1.01365 0.95218 0.85900 0.78587 0.80289 0.78547 1.21305 1.20278 1.19855 1.20437 0.92097 0.89962 1.47964 0.93977 1.18732 0.98353 0.93730 0.86488 1.22047 0.91146 0.97703 0.93732 1.70456 1.29536 1.00488 1.08146 1.23979 0.98473 1.00838 0.90074 1.23502 0.95436 0.92894 0.84525 0.87673 1.86431 1.51323 1.81893 1.17917 1.24549 1.02522 0.98037 0.84912 1.91970 1.75477 1.38962 1.17713 1.22876 0.96502 0.96583 1.05453 1.22526 0.94273 1.01899 1.01933 0.93676 0.95872 0.90366 0.92877 0.85114 0.74550 0.86899 0.93788 0.90910 0.88925 0.90524 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.18 13.06 21.45 0.28 -53.90 16 2 C 0.02 1.29 5.42 84.65 0.46 1.75 16 3 Si 0.94 45.77 29.54 68.60 2.03 47.80 16 4 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 5 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.47 -26.52 7.38 25.60 0.19 -26.33 16 8 H 0.04 2.48 7.82 -2.91 -0.02 2.46 16 9 C 0.03 1.40 1.50 -52.93 -0.08 1.32 16 10 C 0.08 3.79 5.00 86.30 0.43 4.22 16 11 N -0.32 -13.11 5.83 -507.06 -2.96 -16.07 16 12 C -0.01 -0.16 6.59 86.79 0.57 0.41 16 13 C 0.10 2.56 4.54 31.99 0.15 2.70 16 14 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 15 O -0.57 -12.91 13.48 -148.98 -2.01 -14.92 16 16 C -0.02 -0.69 7.64 72.65 0.55 -0.13 16 17 O -0.24 -10.71 10.48 -51.05 -0.53 -11.24 16 18 C -0.18 -7.73 9.96 30.59 0.30 -7.42 16 19 C -0.17 -7.98 9.62 30.60 0.29 -7.68 16 20 H 0.25 14.54 8.32 -92.71 -0.77 13.77 16 21 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.08 3.16 7.99 -2.38 -0.02 3.15 16 23 H 0.05 1.77 7.81 -2.38 -0.02 1.75 16 24 H 0.13 3.37 8.14 -2.39 -0.02 3.35 16 25 H 0.40 5.05 9.11 -74.06 -0.68 4.37 16 26 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 27 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 28 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 29 H 0.09 3.50 8.14 -2.39 -0.02 3.49 16 30 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 31 H 0.06 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -67.76 265.69 0.12 -67.64 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.44 Total: 11.86 kcal Atomic # 6 Polarization: -34.04 SS G_CDS: 2.87 Total: -31.17 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: -2.68 Total: -69.97 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -2.54 Total: -26.16 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -67.76 0.12 -67.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306281375.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.959 kcal (2) G-P(sol) polarization free energy of solvation -67.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds