Wall clock time and date at job start Mon Mar 30 2020 02:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99875 * 2 1 4 4 H 1.48492 * 109.46907 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47068 * 300.00313 * 3 2 1 6 6 H 1.48499 * 109.46775 * 60.00384 * 3 2 1 7 7 C 1.38814 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99311 * 198.02453 * 7 2 1 9 9 N 1.36933 * 120.00220 * 18.29466 * 7 2 1 10 10 C 1.44475 * 114.66837 * 29.37657 * 9 7 2 11 11 C 1.53083 * 110.35265 * 145.97367 * 10 9 7 12 12 S 1.81416 * 107.85321 * 59.12832 * 11 10 9 13 13 C 1.80339 * 103.44972 * 300.82643 * 12 11 10 14 14 H 1.08998 * 108.99849 * 272.42917 * 13 12 11 15 15 C 1.54771 * 109.32130 * 153.46849 * 13 12 11 16 16 C 1.55179 * 103.63199 * 211.92932 * 15 13 12 17 17 C 1.55248 * 102.17645 * 38.87979 * 16 15 13 18 18 C 1.42067 * 114.67164 * 209.13330 * 9 7 2 19 19 H 1.09000 * 105.93328 * 305.97685 * 18 9 7 20 20 H 0.96995 * 120.00221 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.32053 * 266.24479 * 10 9 7 22 22 H 1.08993 * 109.32393 * 25.70587 * 10 9 7 23 23 H 1.09004 * 109.77972 * 178.71051 * 11 10 9 24 24 H 1.08997 * 109.78887 * 299.53552 * 11 10 9 25 25 H 1.09005 * 110.59281 * 330.46630 * 15 13 12 26 26 H 1.09002 * 110.59116 * 93.23309 * 15 13 12 27 27 H 1.08997 * 110.86236 * 157.05978 * 16 15 13 28 28 H 1.09004 * 110.85620 * 280.71065 * 16 15 13 29 29 H 1.09001 * 110.63739 * 79.10415 * 17 16 15 30 30 H 1.09000 * 110.64319 * 202.00069 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0505 -1.2252 0.2889 9 7 1.3775 -2.3579 -0.3733 10 6 0.3082 -2.1790 -1.3282 11 6 0.2365 -3.3773 -2.2780 12 16 -0.0450 -4.8641 -1.2773 13 6 1.3772 -4.8992 -0.1690 14 1 2.1941 -5.4309 -0.6567 15 6 0.9954 -5.6484 1.1304 16 6 1.8478 -4.9469 2.2210 17 6 1.7794 -3.4590 1.7832 18 6 1.8845 -3.5355 0.2387 19 1 2.9554 -3.5412 0.0352 20 1 -0.4850 0.8400 0.0004 21 1 -0.6382 -2.0833 -0.7961 22 1 0.4879 -1.2718 -1.9051 23 1 -0.5871 -3.2433 -2.9794 24 1 1.1751 -3.4722 -2.8239 25 1 -0.0677 -5.5327 1.3414 26 1 1.2575 -6.7038 1.0555 27 1 1.4040 -5.0823 3.2072 28 1 2.8755 -5.3098 2.2034 29 1 0.8315 -3.0131 2.0844 30 1 2.6161 -2.8973 2.1988 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306489271.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:44 Heat of formation + Delta-G solvation = 18.513243 kcal Electronic energy + Delta-G solvation = -13007.513088 eV Core-core repulsion = 10929.204071 eV Total energy + Delta-G solvation = -2078.309017 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.23327 -35.16203 -31.49727 -29.89840 -28.19283 -26.75965 -23.74314 -21.61431 -20.29520 -18.80947 -17.29807 -15.57288 -15.18844 -14.64440 -14.16158 -13.87216 -13.55391 -13.27949 -12.41364 -12.08698 -11.78809 -11.29016 -10.91100 -10.86788 -10.70596 -10.52785 -10.40175 -10.13820 -10.03967 -9.89104 -9.72983 -9.08627 -8.39751 -7.03498 -6.67363 -5.80903 -3.36178 2.40357 3.21489 3.32420 3.41236 3.43586 4.43915 5.00044 5.11497 5.28354 5.37315 5.54311 5.82356 5.87950 5.97521 6.06571 6.08038 6.23981 6.27141 6.34100 6.44459 6.57169 6.69808 6.95933 7.18130 7.24321 7.69656 7.79261 8.47365 9.22403 9.92871 10.15461 11.19360 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.037386 B = 0.012404 C = 0.010109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.769737 B = 2256.753012 C = 2769.200539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.012 3.988 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.275 4.275 8 H 0.065 0.935 9 N -0.584 5.584 10 C 0.193 3.807 11 C -0.102 4.102 12 S -0.280 6.280 13 C -0.050 4.050 14 H 0.077 0.923 15 C -0.100 4.100 16 C -0.125 4.125 17 C -0.129 4.129 18 C 0.199 3.801 19 H 0.017 0.983 20 H 0.255 0.745 21 H 0.052 0.948 22 H 0.068 0.932 23 H 0.095 0.905 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.855 -7.715 -0.181 7.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.188 4.188 3 Si 0.729 3.271 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.405 4.405 8 H 0.083 0.917 9 N -0.305 5.305 10 C 0.067 3.933 11 C -0.251 4.251 12 S -0.053 6.053 13 C -0.179 4.179 14 H 0.096 0.904 15 C -0.139 4.139 16 C -0.164 4.164 17 C -0.169 4.169 18 C 0.089 3.911 19 H 0.034 0.966 20 H 0.065 0.935 21 H 0.070 0.930 22 H 0.086 0.914 23 H 0.113 0.887 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.860 -8.367 -0.327 8.417 hybrid contribution 1.423 1.796 0.055 2.292 sum 2.284 -6.571 -0.272 6.961 Atomic orbital electron populations 1.70122 1.05262 1.25573 1.52875 1.25112 0.95191 0.98556 0.99892 0.86269 0.79539 0.83893 0.77355 1.20177 1.21420 1.21603 1.19226 0.93341 0.85178 1.42748 0.91743 1.42435 1.39344 1.02480 1.46279 1.20459 0.92490 0.91932 0.88461 1.24094 1.03868 0.96998 1.00168 1.85895 1.37483 1.37448 1.44466 1.23290 0.96945 1.00011 0.97674 0.90436 1.22479 1.00941 0.97822 0.92615 1.22595 0.98936 0.97433 0.97481 1.23168 1.02327 0.93506 0.97947 1.19326 0.95527 0.84660 0.91555 0.96580 0.93525 0.92974 0.91387 0.88673 0.91008 0.90558 0.91839 0.91941 0.92055 0.91201 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.36 11.00 55.49 0.61 -24.75 16 2 C 0.01 0.34 4.63 -17.43 -0.08 0.26 16 3 Si 0.90 21.31 29.59 -169.99 -5.03 16.28 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.28 -7.38 8.26 -15.06 -0.12 -7.51 16 8 H 0.06 1.73 7.86 -52.49 -0.41 1.32 16 9 N -0.58 -14.51 2.97 -170.22 -0.51 -15.02 16 10 C 0.19 4.65 4.54 -5.08 -0.02 4.63 16 11 C -0.10 -2.03 6.66 37.20 0.25 -1.78 16 12 S -0.28 -5.42 21.49 -107.50 -2.31 -7.73 16 13 C -0.05 -0.93 3.31 -26.75 -0.09 -1.02 16 14 H 0.08 1.35 8.12 -51.82 -0.42 0.93 16 15 C -0.10 -1.60 6.34 -24.64 -0.16 -1.76 16 16 C -0.13 -1.97 6.94 -24.39 -0.17 -2.14 16 17 C -0.13 -2.60 5.76 -24.48 -0.14 -2.74 16 18 C 0.20 4.30 2.75 -70.15 -0.19 4.11 16 19 H 0.02 0.37 7.93 -51.93 -0.41 -0.04 16 20 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 21 H 0.05 1.41 7.38 -51.93 -0.38 1.02 16 22 H 0.07 1.76 6.79 -51.93 -0.35 1.41 16 23 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 24 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 25 H 0.08 1.30 7.86 -51.93 -0.41 0.89 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 246.82 15.07 3.72 3.72 Total: -1.00 -27.98 246.82 -8.73 -36.71 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -4.48 Total: -1.25 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -0.73 Total: -7.96 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.11 Total: -39.77 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Atomic # 16 Polarization: -5.42 SS G_CDS: -2.31 Total: -7.73 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -27.98 -8.73 -36.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306489271.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.220 kcal (2) G-P(sol) polarization free energy of solvation -27.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds