Wall clock time and date at job start Mon Mar 30 2020 02:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99875 * 2 1 4 4 H 1.48492 * 109.46907 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47068 * 300.00313 * 3 2 1 6 6 H 1.48499 * 109.46775 * 60.00384 * 3 2 1 7 7 C 1.38814 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99311 * 198.02453 * 7 2 1 9 9 N 1.36933 * 120.00220 * 18.29466 * 7 2 1 10 10 C 1.44475 * 114.66837 * 29.37657 * 9 7 2 11 11 C 1.53083 * 110.35265 * 145.97367 * 10 9 7 12 12 S 1.81416 * 107.85321 * 59.12832 * 11 10 9 13 13 C 1.80339 * 103.44972 * 300.82643 * 12 11 10 14 14 H 1.08998 * 108.99849 * 272.42917 * 13 12 11 15 15 C 1.54771 * 109.32130 * 153.46849 * 13 12 11 16 16 C 1.55179 * 103.63199 * 211.92932 * 15 13 12 17 17 C 1.55248 * 102.17645 * 38.87979 * 16 15 13 18 18 C 1.42067 * 114.67164 * 209.13330 * 9 7 2 19 19 H 1.09000 * 105.93328 * 305.97685 * 18 9 7 20 20 H 0.96995 * 120.00221 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.32053 * 266.24479 * 10 9 7 22 22 H 1.08993 * 109.32393 * 25.70587 * 10 9 7 23 23 H 1.09004 * 109.77972 * 178.71051 * 11 10 9 24 24 H 1.08997 * 109.78887 * 299.53552 * 11 10 9 25 25 H 1.09005 * 110.59281 * 330.46630 * 15 13 12 26 26 H 1.09002 * 110.59116 * 93.23309 * 15 13 12 27 27 H 1.08997 * 110.86236 * 157.05978 * 16 15 13 28 28 H 1.09004 * 110.85620 * 280.71065 * 16 15 13 29 29 H 1.09001 * 110.63739 * 79.10415 * 17 16 15 30 30 H 1.09000 * 110.64319 * 202.00069 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0505 -1.2252 0.2889 9 7 1.3775 -2.3579 -0.3733 10 6 0.3082 -2.1790 -1.3282 11 6 0.2365 -3.3773 -2.2780 12 16 -0.0450 -4.8641 -1.2773 13 6 1.3772 -4.8992 -0.1690 14 1 2.1941 -5.4309 -0.6567 15 6 0.9954 -5.6484 1.1304 16 6 1.8478 -4.9469 2.2210 17 6 1.7794 -3.4590 1.7832 18 6 1.8845 -3.5355 0.2387 19 1 2.9554 -3.5412 0.0352 20 1 -0.4850 0.8400 0.0004 21 1 -0.6382 -2.0833 -0.7961 22 1 0.4879 -1.2718 -1.9051 23 1 -0.5871 -3.2433 -2.9794 24 1 1.1751 -3.4722 -2.8239 25 1 -0.0677 -5.5327 1.3414 26 1 1.2575 -6.7038 1.0555 27 1 1.4040 -5.0823 3.2072 28 1 2.8755 -5.3098 2.2034 29 1 0.8315 -3.0131 2.0844 30 1 2.6161 -2.8973 2.1988 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306489271.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:44 Heat of formation + Delta-G solvation = 2.928360 kcal Electronic energy + Delta-G solvation = -13008.188899 eV Core-core repulsion = 10929.204071 eV Total energy + Delta-G solvation = -2078.984828 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.90046 -36.90626 -33.48683 -31.66091 -29.68031 -28.44844 -25.72221 -23.37837 -21.67702 -20.52561 -19.20208 -17.36486 -16.85345 -16.37046 -15.84500 -15.60089 -15.37692 -14.77530 -14.03749 -13.74686 -13.65880 -12.97318 -12.75020 -12.69912 -12.35929 -12.09001 -11.96669 -11.82033 -11.80889 -11.51715 -11.43863 -10.81889 -10.36438 -8.73921 -8.54111 -7.86675 -5.46760 0.86481 1.42501 1.45469 1.55534 1.64461 2.46966 3.19368 3.48657 3.63012 3.75180 4.15721 4.24075 4.32600 4.46904 4.52849 4.62138 4.67776 4.74921 4.84100 5.05115 5.16772 5.19079 5.25431 5.36784 5.54173 5.64833 5.70794 6.39188 7.16288 7.98648 8.11824 9.10518 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.037386 B = 0.012404 C = 0.010109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.769737 B = 2256.753012 C = 2769.200539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.035 4.035 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.291 1.291 7 C -0.283 4.283 8 H 0.061 0.939 9 N -0.597 5.597 10 C 0.204 3.796 11 C -0.095 4.095 12 S -0.274 6.274 13 C -0.053 4.053 14 H 0.097 0.903 15 C -0.093 4.093 16 C -0.110 4.110 17 C -0.127 4.127 18 C 0.187 3.813 19 H 0.011 0.989 20 H 0.252 0.748 21 H 0.016 0.984 22 H 0.041 0.959 23 H 0.116 0.884 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.032 0.968 30 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.828 -9.307 -0.044 9.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.232 4.232 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.218 1.218 7 C -0.413 4.413 8 H 0.078 0.922 9 N -0.318 5.318 10 C 0.078 3.922 11 C -0.244 4.244 12 S -0.046 6.046 13 C -0.182 4.182 14 H 0.115 0.885 15 C -0.132 4.132 16 C -0.148 4.148 17 C -0.168 4.168 18 C 0.078 3.922 19 H 0.029 0.971 20 H 0.061 0.939 21 H 0.034 0.966 22 H 0.059 0.941 23 H 0.134 0.866 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.117 0.883 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.051 0.949 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.848 -9.985 -0.187 10.156 hybrid contribution 1.140 2.272 0.034 2.542 sum 2.988 -7.713 -0.153 8.273 Atomic orbital electron populations 1.70271 1.06585 1.25953 1.54184 1.25806 0.95888 1.01446 1.00068 0.85298 0.78706 0.80027 0.76949 1.19270 1.21325 1.21818 1.19438 0.93311 0.86360 1.42183 0.92167 1.42659 1.39151 1.03144 1.46890 1.20099 0.90647 0.92963 0.88527 1.23929 1.05251 0.95604 0.99665 1.85869 1.38238 1.36004 1.44495 1.23405 0.97295 0.98461 0.99066 0.88480 1.22491 1.00316 0.99466 0.90893 1.22550 1.00651 0.93394 0.98246 1.23036 0.99855 0.96817 0.97086 1.19552 0.95129 0.85239 0.92322 0.97133 0.93897 0.96565 0.94071 0.86613 0.90200 0.91693 0.88298 0.90025 0.89562 0.94908 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.09 11.00 21.65 0.24 -53.85 16 2 C -0.04 -1.94 4.63 84.86 0.39 -1.55 16 3 Si 0.96 44.46 29.59 68.60 2.03 46.49 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 6 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 7 C -0.28 -15.43 8.26 84.03 0.69 -14.74 16 8 H 0.06 3.28 7.86 -2.91 -0.02 3.26 16 9 N -0.60 -30.07 2.97 -692.45 -2.06 -32.13 16 10 C 0.20 10.08 4.54 86.78 0.39 10.47 16 11 C -0.10 -3.72 6.66 72.01 0.48 -3.24 16 12 S -0.27 -10.09 21.49 -56.49 -1.21 -11.31 16 13 C -0.05 -1.85 3.31 30.58 0.10 -1.75 16 14 H 0.10 3.05 8.12 -2.46 -0.02 3.03 16 15 C -0.09 -2.67 6.34 31.95 0.20 -2.47 16 16 C -0.11 -3.11 6.94 32.11 0.22 -2.88 16 17 C -0.13 -5.09 5.76 32.05 0.18 -4.90 16 18 C 0.19 7.93 2.75 45.87 0.13 8.06 16 19 H 0.01 0.48 7.93 -2.39 -0.02 0.46 16 20 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 21 H 0.02 0.92 7.38 -2.39 -0.02 0.90 16 22 H 0.04 2.21 6.79 -2.39 -0.02 2.19 16 23 H 0.12 3.99 8.14 -2.39 -0.02 3.97 16 24 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 25 H 0.06 2.04 7.86 -2.38 -0.02 2.02 16 26 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 29 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -61.01 246.82 2.90 -58.11 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: 1.10 Total: 5.69 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: 2.80 Total: -13.00 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -1.82 Total: -85.98 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: -10.09 SS G_CDS: -1.21 Total: -11.31 kcal Total: -61.01 2.90 -58.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306489271.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.040 kcal (2) G-P(sol) polarization free energy of solvation -61.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds