Wall clock time and date at job start Mon Mar 30 2020 02:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 119.99914 * 2 1 4 4 H 1.48498 * 109.46933 * 239.99593 * 3 2 1 5 5 H 1.48503 * 109.47339 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47485 * 119.99585 * 3 2 1 7 7 C 1.38808 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00127 * 196.91820 * 7 2 1 9 9 N 1.36941 * 120.00224 * 16.91910 * 7 2 1 10 10 C 1.47163 * 121.06104 * 26.21006 * 9 7 2 11 11 C 1.53275 * 108.65769 * 129.33551 * 10 9 7 12 12 O 1.43006 * 109.29589 * 51.99096 * 11 10 9 13 13 C 1.42769 * 114.11421 * 297.84572 * 12 11 10 14 14 H 1.09001 * 109.37319 * 303.27363 * 13 12 11 15 15 C 1.52870 * 109.97060 * 183.15851 * 13 12 11 16 16 C 1.53075 * 109.45353 * 295.67764 * 15 13 12 17 17 O 1.42948 * 109.18571 * 302.44092 * 16 15 13 18 18 C 1.42829 * 113.93126 * 61.76559 * 17 16 15 19 19 C 1.47386 * 121.11898 * 205.96054 * 9 7 2 20 20 H 1.09004 * 110.66880 * 351.56121 * 19 9 7 21 21 H 0.97000 * 120.00256 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.63542 * 9.53645 * 10 9 7 23 23 H 1.08998 * 109.63485 * 249.13656 * 10 9 7 24 24 H 1.08996 * 109.49930 * 171.93805 * 11 10 9 25 25 H 1.09004 * 109.50123 * 292.04879 * 11 10 9 26 26 H 1.09003 * 109.47263 * 55.67057 * 15 13 12 27 27 H 1.08997 * 109.47337 * 175.68526 * 15 13 12 28 28 H 1.09001 * 109.51653 * 62.36076 * 16 15 13 29 29 H 1.09003 * 109.51524 * 182.53155 * 16 15 13 30 30 H 1.08999 * 109.44047 * 58.52573 * 18 17 16 31 31 H 1.08996 * 109.44363 * 178.44710 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0551 -1.2222 0.2727 9 7 1.3700 -2.3626 -0.3441 10 6 0.1971 -2.3476 -1.2327 11 6 0.4201 -3.3660 -2.3563 12 8 0.7702 -4.6298 -1.7859 13 6 1.9857 -4.6152 -1.0372 14 1 2.7976 -4.2616 -1.6726 15 6 2.3089 -6.0238 -0.5387 16 6 1.2247 -6.4790 0.4413 17 8 1.1441 -5.5445 1.5200 18 6 0.7795 -4.2238 1.1164 19 6 1.8360 -3.6676 0.1581 20 1 2.7905 -3.5628 0.6740 21 1 -0.4850 0.8400 -0.0004 22 1 0.0737 -1.3523 -1.6597 23 1 -0.6947 -2.6163 -0.6666 24 1 -0.4949 -3.4709 -2.9392 25 1 1.2273 -3.0229 -3.0035 26 1 2.3446 -6.7095 -1.3853 27 1 3.2752 -6.0181 -0.0346 28 1 0.2648 -6.5252 -0.0731 29 1 1.4774 -7.4649 0.8317 30 1 -0.1872 -4.2520 0.6136 31 1 0.7130 -3.5814 1.9944 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306637573.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:07 Heat of formation + Delta-G solvation = -66.097589 kcal Electronic energy + Delta-G solvation = -15409.720156 eV Core-core repulsion = 12884.989267 eV Total energy + Delta-G solvation = -2524.730889 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.56009 -36.81567 -34.63256 -32.05250 -31.45525 -29.43274 -27.33163 -24.21685 -23.87653 -22.78569 -21.10657 -18.60500 -16.96121 -15.80736 -15.54118 -15.35731 -15.17046 -14.83682 -14.15863 -13.48819 -13.09458 -12.83917 -12.56127 -12.23866 -11.63678 -11.44226 -11.06236 -10.91385 -10.78493 -10.52108 -10.28359 -10.02571 -9.82988 -9.66853 -8.98568 -8.96688 -8.49061 -6.76497 -5.87185 -3.30820 3.33965 3.39717 3.40635 4.27486 4.39652 4.51849 5.20295 5.26585 5.30539 5.42668 5.59596 5.71068 5.79428 5.97708 6.07727 6.10728 6.18443 6.25168 6.34309 6.37306 6.48320 6.76006 6.78237 7.09044 7.47406 7.66776 7.77736 7.91300 8.30621 9.08220 9.70408 10.27717 11.20575 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045822 B = 0.010471 C = 0.009783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.918235 B = 2673.377473 C = 2861.321921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.585 5.585 10 C 0.138 3.862 11 C 0.038 3.962 12 O -0.390 6.390 13 C 0.078 3.922 14 H 0.053 0.947 15 C -0.143 4.143 16 C 0.066 3.934 17 O -0.394 6.394 18 C 0.053 3.947 19 C 0.115 3.885 20 H 0.077 0.923 21 H 0.256 0.744 22 H 0.095 0.905 23 H 0.028 0.972 24 H 0.081 0.919 25 H 0.040 0.960 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.108 -8.596 -2.438 9.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.736 3.264 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.385 4.385 8 H 0.086 0.914 9 N -0.309 5.309 10 C 0.013 3.987 11 C -0.040 4.040 12 O -0.309 6.309 13 C 0.019 3.981 14 H 0.071 0.929 15 C -0.181 4.181 16 C -0.011 4.011 17 O -0.312 6.312 18 C -0.025 4.025 19 C 0.007 3.993 20 H 0.095 0.905 21 H 0.066 0.934 22 H 0.113 0.887 23 H 0.046 0.954 24 H 0.099 0.901 25 H 0.059 0.941 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.914 -8.629 -2.251 9.121 hybrid contribution 0.459 1.308 -0.299 1.418 sum 2.373 -7.321 -2.550 8.107 Atomic orbital electron populations 1.70015 1.05262 1.25855 1.53477 1.25041 0.95347 0.98460 1.00609 0.86308 0.78879 0.83022 0.78199 1.20984 1.21539 1.20760 1.19157 0.92649 0.84344 1.42387 0.91372 1.44161 1.33633 1.00631 1.52478 1.21461 0.89074 0.98482 0.89713 1.23331 0.98975 0.84989 0.96685 1.87715 1.41480 1.32269 1.69456 1.22353 0.87142 0.94964 0.93658 0.92934 1.22132 1.00073 0.96266 0.99666 1.22403 0.97952 0.92248 0.88520 1.87850 1.90604 1.20156 1.32635 1.23189 0.98329 0.81502 0.99469 1.21765 0.97575 0.87239 0.92712 0.90525 0.93396 0.88671 0.95366 0.90109 0.94117 0.90930 0.90209 0.92905 0.89845 0.93202 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.64 11.14 55.49 0.62 -25.02 16 2 C 0.00 0.12 4.95 -17.43 -0.09 0.03 16 3 Si 0.91 21.39 29.59 -169.99 -5.03 16.36 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.26 -6.95 9.69 -15.06 -0.15 -7.09 16 8 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 9 N -0.59 -14.61 2.72 -164.09 -0.45 -15.06 16 10 C 0.14 3.29 4.96 -3.54 -0.02 3.28 16 11 C 0.04 0.76 6.99 37.30 0.26 1.02 16 12 O -0.39 -7.76 9.58 -35.23 -0.34 -8.10 16 13 C 0.08 1.48 2.90 -26.66 -0.08 1.41 16 14 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 15 C -0.14 -2.19 5.85 -26.76 -0.16 -2.35 16 16 C 0.07 1.04 6.72 37.20 0.25 1.28 16 17 O -0.39 -7.52 10.77 -35.23 -0.38 -7.90 16 18 C 0.05 1.13 6.08 37.21 0.23 1.35 16 19 C 0.12 2.49 2.94 -67.26 -0.20 2.29 16 20 H 0.08 1.66 8.00 -51.93 -0.42 1.25 16 21 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 22 H 0.10 2.48 6.13 -51.93 -0.32 2.16 16 23 H 0.03 0.71 7.38 -51.93 -0.38 0.33 16 24 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.05 0.86 7.89 -51.93 -0.41 0.45 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.05 1.11 6.82 -51.93 -0.35 0.75 16 31 H 0.09 2.01 8.14 -51.93 -0.42 1.58 16 LS Contribution 245.61 15.07 3.70 3.70 Total: -1.00 -28.98 245.61 -6.21 -35.19 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -4.39 Total: -0.39 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 0.06 Total: 1.22 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.17 Total: -40.08 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.72 Total: -16.00 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -28.98 -6.21 -35.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306637573.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.911 kcal (2) G-P(sol) polarization free energy of solvation -28.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds