Wall clock time and date at job start Mon Mar 30 2020 02:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 119.99914 * 2 1 4 4 H 1.48498 * 109.46933 * 239.99593 * 3 2 1 5 5 H 1.48503 * 109.47339 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47485 * 119.99585 * 3 2 1 7 7 C 1.38808 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00127 * 196.91820 * 7 2 1 9 9 N 1.36941 * 120.00224 * 16.91910 * 7 2 1 10 10 C 1.47163 * 121.06104 * 26.21006 * 9 7 2 11 11 C 1.53275 * 108.65769 * 129.33551 * 10 9 7 12 12 O 1.43006 * 109.29589 * 51.99096 * 11 10 9 13 13 C 1.42769 * 114.11421 * 297.84572 * 12 11 10 14 14 H 1.09001 * 109.37319 * 303.27363 * 13 12 11 15 15 C 1.52870 * 109.97060 * 183.15851 * 13 12 11 16 16 C 1.53075 * 109.45353 * 295.67764 * 15 13 12 17 17 O 1.42948 * 109.18571 * 302.44092 * 16 15 13 18 18 C 1.42829 * 113.93126 * 61.76559 * 17 16 15 19 19 C 1.47386 * 121.11898 * 205.96054 * 9 7 2 20 20 H 1.09004 * 110.66880 * 351.56121 * 19 9 7 21 21 H 0.97000 * 120.00256 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.63542 * 9.53645 * 10 9 7 23 23 H 1.08998 * 109.63485 * 249.13656 * 10 9 7 24 24 H 1.08996 * 109.49930 * 171.93805 * 11 10 9 25 25 H 1.09004 * 109.50123 * 292.04879 * 11 10 9 26 26 H 1.09003 * 109.47263 * 55.67057 * 15 13 12 27 27 H 1.08997 * 109.47337 * 175.68526 * 15 13 12 28 28 H 1.09001 * 109.51653 * 62.36076 * 16 15 13 29 29 H 1.09003 * 109.51524 * 182.53155 * 16 15 13 30 30 H 1.08999 * 109.44047 * 58.52573 * 18 17 16 31 31 H 1.08996 * 109.44363 * 178.44710 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0551 -1.2222 0.2727 9 7 1.3700 -2.3626 -0.3441 10 6 0.1971 -2.3476 -1.2327 11 6 0.4201 -3.3660 -2.3563 12 8 0.7702 -4.6298 -1.7859 13 6 1.9857 -4.6152 -1.0372 14 1 2.7976 -4.2616 -1.6726 15 6 2.3089 -6.0238 -0.5387 16 6 1.2247 -6.4790 0.4413 17 8 1.1441 -5.5445 1.5200 18 6 0.7795 -4.2238 1.1164 19 6 1.8360 -3.6676 0.1581 20 1 2.7905 -3.5628 0.6740 21 1 -0.4850 0.8400 -0.0004 22 1 0.0737 -1.3523 -1.6597 23 1 -0.6947 -2.6163 -0.6666 24 1 -0.4949 -3.4709 -2.9392 25 1 1.2273 -3.0229 -3.0035 26 1 2.3446 -6.7095 -1.3853 27 1 3.2752 -6.0181 -0.0346 28 1 0.2648 -6.5252 -0.0731 29 1 1.4774 -7.4649 0.8317 30 1 -0.1872 -4.2520 0.6136 31 1 0.7130 -3.5814 1.9944 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306637573.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:06 Heat of formation + Delta-G solvation = -85.922293 kcal Electronic energy + Delta-G solvation = -15410.579820 eV Core-core repulsion = 12884.989267 eV Total energy + Delta-G solvation = -2525.590552 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.14797 -38.38349 -36.48001 -33.62072 -33.30668 -31.05502 -29.21178 -25.81790 -25.63444 -24.48116 -22.71806 -20.24466 -18.91371 -17.38207 -17.10367 -17.06044 -16.88456 -16.40692 -15.98729 -15.05683 -14.78471 -14.64729 -14.13508 -13.87586 -13.18356 -13.05081 -12.90736 -12.69600 -12.49564 -12.24086 -12.12159 -11.85281 -11.37685 -11.26916 -10.77912 -10.66755 -10.33048 -8.73923 -7.93204 -5.40485 1.45750 1.47462 1.54579 2.43617 2.82222 2.96906 3.21188 3.52241 3.85421 4.00603 4.10744 4.18176 4.27257 4.44424 4.50550 4.56451 4.69582 4.80075 4.86413 4.92378 4.94171 5.08933 5.20579 5.26901 5.51662 5.58403 6.19914 6.29288 6.34568 7.03561 7.70785 8.25212 9.12140 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045822 B = 0.010471 C = 0.009783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.918235 B = 2673.377473 C = 2861.321921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.045 4.045 3 Si 0.971 3.029 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.270 4.270 8 H 0.069 0.931 9 N -0.602 5.602 10 C 0.145 3.855 11 C 0.049 3.951 12 O -0.389 6.389 13 C 0.078 3.922 14 H 0.053 0.947 15 C -0.135 4.135 16 C 0.058 3.942 17 O -0.401 6.401 18 C 0.069 3.931 19 C 0.109 3.891 20 H 0.072 0.928 21 H 0.253 0.747 22 H 0.068 0.932 23 H 0.003 0.997 24 H 0.109 0.891 25 H 0.045 0.955 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.046 0.954 29 H 0.123 0.877 30 H 0.033 0.967 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.263 -9.983 -3.082 10.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.241 4.241 3 Si 0.799 3.201 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.399 4.399 8 H 0.087 0.913 9 N -0.326 5.326 10 C 0.019 3.981 11 C -0.029 4.029 12 O -0.308 6.308 13 C 0.019 3.981 14 H 0.071 0.929 15 C -0.173 4.173 16 C -0.018 4.018 17 O -0.319 6.319 18 C -0.010 4.010 19 C 0.002 3.998 20 H 0.091 0.909 21 H 0.062 0.938 22 H 0.087 0.913 23 H 0.021 0.979 24 H 0.127 0.873 25 H 0.064 0.936 26 H 0.119 0.881 27 H 0.115 0.885 28 H 0.065 0.935 29 H 0.141 0.859 30 H 0.051 0.949 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.086 -10.053 -2.898 10.908 hybrid contribution 0.105 1.660 -0.064 1.664 sum 3.191 -8.393 -2.961 9.455 Atomic orbital electron populations 1.70167 1.06622 1.26216 1.54740 1.25791 0.96092 1.01465 1.00740 0.85291 0.77550 0.78914 0.78370 1.20265 1.21862 1.20179 1.19470 0.92930 0.85548 1.41983 0.91345 1.44380 1.33686 1.01386 1.53183 1.21294 0.88035 0.98320 0.90419 1.23201 1.00520 0.83992 0.95156 1.87729 1.42024 1.31712 1.69372 1.22445 0.86749 0.96686 0.92198 0.92908 1.22156 1.00505 0.94070 1.00574 1.22730 0.98033 0.92957 0.88060 1.87840 1.90459 1.19355 1.34239 1.22782 0.97387 0.82699 0.98088 1.21936 0.97165 0.86547 0.94171 0.90934 0.93831 0.91328 0.97891 0.87324 0.93628 0.88064 0.88515 0.93531 0.85927 0.94863 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.37 11.14 21.65 0.24 -54.13 16 2 C -0.04 -2.48 4.95 84.86 0.42 -2.06 16 3 Si 0.97 44.35 29.59 68.60 2.03 46.38 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.27 -14.80 9.69 84.03 0.81 -13.99 16 8 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 9 N -0.60 -30.44 2.72 -673.05 -1.83 -32.27 16 10 C 0.14 7.03 4.96 86.35 0.43 7.46 16 11 C 0.05 1.90 6.99 72.07 0.50 2.40 16 12 O -0.39 -14.71 9.58 -148.98 -1.43 -16.13 16 13 C 0.08 2.81 2.90 30.64 0.09 2.90 16 14 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 15 C -0.14 -3.63 5.85 30.58 0.18 -3.46 16 16 C 0.06 1.64 6.72 72.01 0.48 2.13 16 17 O -0.40 -14.67 10.77 -148.98 -1.60 -16.27 16 18 C 0.07 2.94 6.08 72.02 0.44 3.38 16 19 C 0.11 4.68 2.94 44.94 0.13 4.81 16 20 H 0.07 3.13 8.00 -2.38 -0.02 3.11 16 21 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 22 H 0.07 3.68 6.13 -2.39 -0.01 3.66 16 23 H 0.00 0.16 7.38 -2.39 -0.02 0.14 16 24 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 25 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.05 1.39 7.89 -2.39 -0.02 1.37 16 29 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.03 1.50 6.82 -2.39 -0.02 1.49 16 31 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -62.43 245.61 2.00 -60.43 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 1.10 Total: 8.43 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 3.49 Total: 3.57 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -1.59 Total: -86.40 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -3.03 Total: -32.41 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -62.43 2.00 -60.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306637573.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.490 kcal (2) G-P(sol) polarization free energy of solvation -62.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds