Wall clock time and date at job start Mon Mar 30 2020 02:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47194 * 120.00507 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00070 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99349 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00466 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99719 * 180.02562 * 10 9 7 13 13 H 1.09000 * 109.46827 * 60.00337 * 12 10 9 14 14 C 1.53000 * 109.47106 * 300.00486 * 12 10 9 15 15 C 1.53000 * 109.47251 * 180.02562 * 14 12 10 16 16 C 1.53003 * 109.46986 * 59.99937 * 15 14 12 17 17 C 1.52998 * 109.46818 * 300.00165 * 16 15 14 18 18 H 1.09005 * 109.47142 * 180.02562 * 17 16 15 19 19 O 1.42911 * 109.47282 * 299.99766 * 17 16 15 20 20 C 1.52995 * 109.47639 * 60.00437 * 17 16 15 21 21 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 22 22 H 0.96996 * 120.00087 * 359.97438 * 9 7 2 23 23 H 1.09003 * 109.46949 * 300.00393 * 14 12 10 24 24 H 1.09005 * 109.47048 * 59.99849 * 14 12 10 25 25 H 1.08994 * 109.47288 * 180.02562 * 15 14 12 26 26 H 1.09000 * 109.46641 * 299.99826 * 15 14 12 27 27 H 1.08990 * 109.47173 * 60.00071 * 16 15 14 28 28 H 1.09002 * 109.46300 * 180.02562 * 16 15 14 29 29 H 0.96694 * 113.99817 * 300.00629 * 19 17 16 30 30 H 1.08994 * 109.47450 * 179.97438 * 20 17 16 31 31 H 1.08998 * 109.47126 * 59.99252 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1020 1.6964 1.2124 6 1 3.1018 1.6964 -1.2125 7 6 2.0090 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 1 0.6169 -4.9209 -0.8876 14 6 0.3646 -4.9437 1.2517 15 6 -0.3999 -6.2690 1.2527 16 6 0.5948 -7.4315 1.2530 17 6 1.4740 -7.3507 0.0034 18 1 2.1824 -8.1792 0.0034 19 8 0.6521 -7.4274 -1.1631 20 6 2.2385 -6.0255 0.0025 21 1 -0.4850 0.8401 0.0004 22 1 0.3534 -2.3906 0.0024 23 1 0.9916 -4.8856 2.1415 24 1 -0.3437 -4.1152 1.2517 25 1 -1.0266 -6.3263 2.1426 26 1 -1.0268 -6.3274 0.3629 27 1 1.2217 -7.3731 2.1427 28 1 0.0500 -8.3757 1.2532 29 1 0.1373 -8.2433 -1.2286 30 1 2.8652 -5.9682 -0.8874 31 1 2.8654 -5.9671 0.8923 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306709913.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:26 Heat of formation + Delta-G solvation = -114.951728 kcal Electronic energy + Delta-G solvation = -14579.697239 eV Core-core repulsion = 12052.847876 eV Total energy + Delta-G solvation = -2526.849363 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.37546 -37.52435 -34.68620 -33.88690 -31.24221 -30.47244 -29.44433 -25.13758 -22.82596 -22.13293 -19.85305 -18.81134 -17.83809 -16.64784 -16.05688 -15.21720 -14.56081 -14.29155 -13.93317 -13.79539 -13.47436 -12.54782 -12.37239 -12.08185 -12.06797 -11.53606 -11.35775 -11.03279 -10.82185 -10.59333 -10.40026 -10.37633 -10.16223 -9.94374 -9.48136 -9.43960 -8.22222 -7.90387 -6.36222 -3.76813 3.23423 3.28468 3.33267 3.99219 4.21998 4.41682 4.82071 4.92741 5.02496 5.25667 5.29450 5.54784 5.59039 5.65539 5.74586 5.80535 5.96910 6.08267 6.20539 6.28893 6.43218 6.47922 6.61808 6.76980 6.83418 7.59911 7.78163 8.12204 8.67789 9.23269 9.62397 10.14175 10.81525 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.057907 B = 0.007323 C = 0.006929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.414660 B = 3822.846835 C = 4040.146152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.284 1.284 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.562 5.562 10 C 0.445 3.555 11 O -0.600 6.600 12 C -0.092 4.092 13 H 0.088 0.912 14 C -0.110 4.110 15 C -0.112 4.112 16 C -0.151 4.151 17 C 0.104 3.896 18 H 0.051 0.949 19 O -0.561 6.561 20 C -0.086 4.086 21 H 0.271 0.729 22 H 0.393 0.607 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.369 0.631 30 H 0.072 0.928 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.870 -12.725 1.961 13.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.119 0.881 9 N -0.197 5.197 10 C 0.231 3.769 11 O -0.485 6.485 12 C -0.113 4.113 13 H 0.106 0.894 14 C -0.148 4.148 15 C -0.150 4.150 16 C -0.189 4.189 17 C 0.045 3.955 18 H 0.069 0.931 19 O -0.365 6.365 20 C -0.123 4.123 21 H 0.081 0.919 22 H 0.226 0.774 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.215 0.785 30 H 0.090 0.910 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.929 -11.940 1.853 12.236 hybrid contribution -0.461 0.328 0.164 0.589 sum -2.389 -11.612 2.017 12.026 Atomic orbital electron populations 1.69611 1.05914 1.28173 1.50650 1.25257 0.95620 0.99666 0.97393 0.85931 0.78767 0.80557 0.79029 1.20979 1.19948 1.19936 1.19686 0.93355 0.82468 1.47597 0.88062 1.41900 1.09225 1.04614 1.63944 1.19995 0.88121 0.85046 0.83727 1.90489 1.14134 1.87500 1.56419 1.21044 0.97219 0.93666 0.99404 0.89360 1.21533 0.98391 0.97287 0.97598 1.21439 0.97536 0.94279 1.01741 1.22253 0.98906 0.98642 0.99095 1.21893 0.91212 0.98126 0.84270 0.93111 1.86605 1.61735 1.44191 1.44001 1.21264 0.96697 0.90894 1.03488 0.91868 0.77364 0.91950 0.91293 0.92325 0.91369 0.91125 0.92272 0.78533 0.90972 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.16 13.05 55.50 0.72 -24.43 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.53 29.55 -169.99 -5.02 16.51 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.30 -8.69 9.68 -14.93 -0.14 -8.84 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 9 N -0.56 -14.88 5.18 -10.96 -0.06 -14.94 16 10 C 0.44 11.07 7.11 -10.98 -0.08 10.99 16 11 O -0.60 -16.94 15.56 5.55 0.09 -16.85 16 12 C -0.09 -1.76 2.38 -91.77 -0.22 -1.97 16 13 H 0.09 1.71 7.68 -51.93 -0.40 1.31 16 14 C -0.11 -1.82 5.10 -26.73 -0.14 -1.95 16 15 C -0.11 -1.45 5.78 -26.73 -0.15 -1.61 16 16 C -0.15 -1.73 5.64 -26.73 -0.15 -1.88 16 17 C 0.10 1.35 3.77 -26.73 -0.10 1.25 16 18 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 19 O -0.56 -7.34 11.97 -35.23 -0.42 -7.76 16 20 C -0.09 -1.47 4.23 -26.73 -0.11 -1.58 16 21 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 22 H 0.39 10.01 7.32 -40.82 -0.30 9.72 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.07 1.19 7.56 -51.93 -0.39 0.79 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.89 7.68 -51.93 -0.40 0.49 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.37 3.05 9.08 45.56 0.41 3.47 16 30 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 31 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 LS Contribution 257.52 15.07 3.88 3.88 Total: -1.00 -32.25 257.52 -5.54 -37.79 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -3.54 Total: 10.88 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -1.19 Total: -5.08 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.67 Total: -39.37 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.34 Total: -24.61 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.25 -5.54 -37.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306709913.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.158 kcal (2) G-P(sol) polarization free energy of solvation -32.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds