Wall clock time and date at job start Mon Mar 30 2020 02:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47194 * 120.00507 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00070 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99349 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00466 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99719 * 180.02562 * 10 9 7 13 13 H 1.09000 * 109.46827 * 60.00337 * 12 10 9 14 14 C 1.53000 * 109.47106 * 300.00486 * 12 10 9 15 15 C 1.53000 * 109.47251 * 180.02562 * 14 12 10 16 16 C 1.53003 * 109.46986 * 59.99937 * 15 14 12 17 17 C 1.52998 * 109.46818 * 300.00165 * 16 15 14 18 18 H 1.09005 * 109.47142 * 180.02562 * 17 16 15 19 19 O 1.42911 * 109.47282 * 299.99766 * 17 16 15 20 20 C 1.52995 * 109.47639 * 60.00437 * 17 16 15 21 21 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 22 22 H 0.96996 * 120.00087 * 359.97438 * 9 7 2 23 23 H 1.09003 * 109.46949 * 300.00393 * 14 12 10 24 24 H 1.09005 * 109.47048 * 59.99849 * 14 12 10 25 25 H 1.08994 * 109.47288 * 180.02562 * 15 14 12 26 26 H 1.09000 * 109.46641 * 299.99826 * 15 14 12 27 27 H 1.08990 * 109.47173 * 60.00071 * 16 15 14 28 28 H 1.09002 * 109.46300 * 180.02562 * 16 15 14 29 29 H 0.96694 * 113.99817 * 300.00629 * 19 17 16 30 30 H 1.08994 * 109.47450 * 179.97438 * 20 17 16 31 31 H 1.08998 * 109.47126 * 59.99252 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1020 1.6964 1.2124 6 1 3.1018 1.6964 -1.2125 7 6 2.0090 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 1 0.6169 -4.9209 -0.8876 14 6 0.3646 -4.9437 1.2517 15 6 -0.3999 -6.2690 1.2527 16 6 0.5948 -7.4315 1.2530 17 6 1.4740 -7.3507 0.0034 18 1 2.1824 -8.1792 0.0034 19 8 0.6521 -7.4274 -1.1631 20 6 2.2385 -6.0255 0.0025 21 1 -0.4850 0.8401 0.0004 22 1 0.3534 -2.3906 0.0024 23 1 0.9916 -4.8856 2.1415 24 1 -0.3437 -4.1152 1.2517 25 1 -1.0266 -6.3263 2.1426 26 1 -1.0268 -6.3274 0.3629 27 1 1.2217 -7.3731 2.1427 28 1 0.0500 -8.3757 1.2532 29 1 0.1373 -8.2433 -1.2286 30 1 2.8652 -5.9682 -0.8874 31 1 2.8654 -5.9671 0.8923 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306709913.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:26 Heat of formation + Delta-G solvation = -139.671434 kcal Electronic energy + Delta-G solvation = -14580.769166 eV Core-core repulsion = 12052.847876 eV Total energy + Delta-G solvation = -2527.921290 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.91152 -39.11154 -36.07969 -35.81532 -33.31001 -31.80756 -30.67573 -27.15144 -24.33841 -23.32147 -21.23753 -20.50526 -19.90011 -17.91703 -17.57531 -16.83385 -16.29595 -15.82036 -15.54351 -15.30124 -14.92673 -14.29308 -13.79783 -13.57590 -13.37588 -13.17269 -12.93565 -12.59441 -12.48071 -12.14347 -12.10262 -11.73717 -11.60400 -11.51028 -11.21699 -10.52636 -10.22882 -10.04707 -8.49019 -5.98954 1.37842 1.39214 1.51116 2.02003 2.28414 3.16629 3.19024 3.45895 3.78547 3.93759 4.00102 4.27009 4.30513 4.48526 4.49606 4.53616 4.71598 4.79478 5.05925 5.10934 5.22842 5.23659 5.31292 5.36591 5.39274 5.53416 5.97288 6.55661 7.06462 7.08678 7.52586 8.07688 8.68282 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.057907 B = 0.007323 C = 0.006929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.414660 B = 3822.846835 C = 4040.146152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.996 3.004 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.342 4.342 8 H 0.078 0.922 9 N -0.569 5.569 10 C 0.437 3.563 11 O -0.639 6.639 12 C -0.080 4.080 13 H 0.088 0.912 14 C -0.107 4.107 15 C -0.106 4.106 16 C -0.146 4.146 17 C 0.112 3.888 18 H 0.075 0.925 19 O -0.580 6.580 20 C -0.087 4.087 21 H 0.279 0.721 22 H 0.395 0.605 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.392 0.608 30 H 0.046 0.954 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.904 -13.784 2.443 14.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.819 3.181 4 H -0.192 1.192 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.472 4.472 8 H 0.096 0.904 9 N -0.204 5.204 10 C 0.225 3.775 11 O -0.527 6.527 12 C -0.102 4.102 13 H 0.106 0.894 14 C -0.145 4.145 15 C -0.144 4.144 16 C -0.183 4.183 17 C 0.053 3.947 18 H 0.093 0.907 19 O -0.389 6.389 20 C -0.125 4.125 21 H 0.089 0.911 22 H 0.229 0.771 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.114 0.886 29 H 0.242 0.758 30 H 0.065 0.935 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.002 -13.030 2.333 13.574 hybrid contribution -0.147 0.652 -0.017 0.668 sum -3.150 -12.378 2.317 12.981 Atomic orbital electron populations 1.69677 1.06914 1.29502 1.49918 1.26105 0.96593 1.02532 0.95993 0.84957 0.77781 0.76382 0.79003 1.19162 1.19542 1.19712 1.19704 0.92773 0.84228 1.50451 0.90358 1.41976 1.09273 1.04777 1.64393 1.21115 0.88057 0.86548 0.81796 1.90447 1.16143 1.88354 1.57796 1.21002 0.97428 0.90921 1.00834 0.89416 1.21521 0.97827 0.99590 0.95574 1.21419 0.97666 0.92360 1.02916 1.22242 0.98461 0.99514 0.98090 1.21755 0.91838 0.95821 0.85256 0.90696 1.86545 1.62178 1.46180 1.43970 1.21268 0.96492 0.92843 1.01941 0.91146 0.77051 0.92654 0.92549 0.90207 0.91107 0.90763 0.88612 0.75796 0.93495 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.22 13.05 21.66 0.28 -50.94 16 2 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 3 Si 1.00 44.06 29.55 68.60 2.03 46.09 16 4 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.34 -20.38 9.68 84.04 0.81 -19.57 16 8 H 0.08 4.93 7.16 -2.92 -0.02 4.91 16 9 N -0.57 -31.25 5.18 -306.98 -1.59 -32.84 16 10 C 0.44 22.59 7.11 87.66 0.62 23.21 16 11 O -0.64 -37.79 15.56 -3.05 -0.05 -37.84 16 12 C -0.08 -3.12 2.38 -11.54 -0.03 -3.15 16 13 H 0.09 3.42 7.68 -2.39 -0.02 3.40 16 14 C -0.11 -3.47 5.10 30.59 0.16 -3.32 16 15 C -0.11 -2.44 5.78 30.60 0.18 -2.26 16 16 C -0.15 -2.76 5.64 30.59 0.17 -2.59 16 17 C 0.11 2.62 3.77 30.59 0.12 2.74 16 18 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 19 O -0.58 -13.61 11.97 -148.98 -1.78 -15.39 16 20 C -0.09 -3.00 4.23 30.59 0.13 -2.87 16 21 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 22 H 0.40 20.83 7.32 -92.71 -0.68 20.15 16 23 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.06 1.94 7.56 -2.38 -0.02 1.92 16 25 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 26 H 0.07 1.62 7.68 -2.39 -0.02 1.60 16 27 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.39 5.01 9.08 -74.06 -0.67 4.34 16 30 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 31 H 0.07 2.49 8.10 -2.39 -0.02 2.48 16 Total: -1.00 -71.16 257.52 1.30 -69.86 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: -0.21 Total: 29.08 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 2.63 Total: -8.01 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -1.31 Total: -83.78 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -1.83 Total: -53.23 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -71.16 1.30 -69.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306709913.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.811 kcal (2) G-P(sol) polarization free energy of solvation -71.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds