Wall clock time and date at job start Mon Mar 30 2020 02:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86790 * 120.00327 * 2 1 4 4 H 1.48504 * 109.47146 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47337 * 299.99867 * 3 2 1 6 6 H 1.48507 * 109.47221 * 59.99796 * 3 2 1 7 7 C 1.38954 * 119.99361 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99444 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00442 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00055 * 179.97438 * 9 7 2 11 11 O 1.21284 * 119.99921 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99991 * 180.02562 * 10 9 7 13 13 H 1.09002 * 109.47152 * 300.00060 * 12 10 9 14 14 C 1.53005 * 109.47304 * 59.99961 * 12 10 9 15 15 C 1.52997 * 109.47452 * 180.02562 * 14 12 10 16 16 C 1.53002 * 109.46817 * 300.00239 * 15 14 12 17 17 C 1.53000 * 109.47233 * 60.00194 * 16 15 14 18 18 H 1.09002 * 109.47398 * 59.99826 * 17 16 15 19 19 O 1.42896 * 109.47231 * 179.97438 * 17 16 15 20 20 C 1.52997 * 109.47060 * 299.99657 * 17 16 15 21 21 H 0.97001 * 119.99755 * 359.97438 * 1 2 3 22 22 H 0.97004 * 119.99873 * 0.02562 * 9 7 2 23 23 H 1.09002 * 109.46935 * 59.99966 * 14 12 10 24 24 H 1.09001 * 109.46812 * 300.00308 * 14 12 10 25 25 H 1.08993 * 109.47194 * 179.97438 * 15 14 12 26 26 H 1.09002 * 109.46695 * 59.99734 * 15 14 12 27 27 H 1.08992 * 109.47063 * 299.99823 * 16 15 14 28 28 H 1.09004 * 109.46733 * 179.97438 * 16 15 14 29 29 H 0.96703 * 114.00193 * 299.99961 * 19 17 16 30 30 H 1.08996 * 109.47853 * 180.02562 * 20 17 16 31 31 H 1.09002 * 109.47153 * 300.00319 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2035 0.0005 8 1 3.0887 -1.2035 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2099 -3.5579 0.0010 12 6 1.2435 -4.8630 0.0000 13 1 0.6165 -4.9209 0.8897 14 6 0.3643 -4.9438 -1.2497 15 6 -0.4012 -6.2684 -1.2500 16 6 0.5926 -7.4317 -1.2495 17 6 1.4717 -7.3510 0.0002 18 1 0.8446 -7.4085 0.8899 19 8 2.3995 -8.4378 0.0009 20 6 2.2372 -6.0264 0.0005 21 1 -0.4850 0.8401 0.0004 22 1 0.3532 -2.3906 -0.0002 23 1 0.9914 -4.8859 -2.1394 24 1 -0.3439 -4.1152 -1.2497 25 1 -1.0278 -6.3257 -2.1399 26 1 -1.0282 -6.3259 -0.3602 27 1 1.2196 -7.3743 -2.1391 28 1 0.0472 -8.3755 -1.2492 29 1 1.9830 -9.3106 0.0010 30 1 2.8639 -5.9689 0.8904 31 1 2.8643 -5.9689 -0.8893 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306709914.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:28 Heat of formation + Delta-G solvation = -141.727783 kcal Electronic energy + Delta-G solvation = -14448.069630 eV Core-core repulsion = 11920.059170 eV Total energy + Delta-G solvation = -2528.010460 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.90027 -39.06137 -36.39944 -36.02011 -33.32506 -31.86299 -30.43160 -27.15586 -24.38780 -23.21083 -21.35649 -20.59129 -19.93761 -18.25019 -17.58340 -16.72518 -16.20868 -15.83278 -15.56533 -15.39016 -14.88721 -14.31389 -14.13693 -13.55639 -13.42989 -13.26687 -12.93550 -12.56554 -12.42564 -12.12451 -12.11663 -11.72849 -11.56373 -11.54261 -11.32825 -10.69784 -10.26589 -10.04699 -8.49956 -5.99131 1.34598 1.40177 1.54638 2.00250 2.27998 2.99590 3.16460 3.44178 3.77177 3.88376 4.06530 4.20371 4.24441 4.37056 4.43316 4.54029 4.66666 4.68552 5.05238 5.13346 5.18074 5.21660 5.24301 5.33852 5.38865 5.49990 5.97008 6.55632 6.99125 7.08671 7.51894 8.07660 8.67615 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.060324 B = 0.007049 C = 0.006485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.048055 B = 3971.372819 C = 4316.519578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.994 3.006 4 H -0.276 1.276 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.340 4.340 8 H 0.076 0.924 9 N -0.566 5.566 10 C 0.438 3.562 11 O -0.640 6.640 12 C -0.083 4.083 13 H 0.105 0.895 14 C -0.110 4.110 15 C -0.107 4.107 16 C -0.144 4.144 17 C 0.111 3.889 18 H 0.074 0.926 19 O -0.587 6.587 20 C -0.085 4.085 21 H 0.279 0.721 22 H 0.398 0.602 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.396 0.604 30 H 0.047 0.953 31 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.760 -12.802 -1.342 14.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.210 4.210 3 Si 0.817 3.183 4 H -0.200 1.200 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.469 4.469 8 H 0.094 0.906 9 N -0.202 5.202 10 C 0.226 3.774 11 O -0.529 6.529 12 C -0.104 4.104 13 H 0.123 0.877 14 C -0.148 4.148 15 C -0.144 4.144 16 C -0.182 4.182 17 C 0.053 3.947 18 H 0.092 0.908 19 O -0.396 6.396 20 C -0.123 4.123 21 H 0.089 0.911 22 H 0.232 0.768 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.115 0.885 29 H 0.246 0.754 30 H 0.066 0.934 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.688 -12.147 -1.342 13.089 hybrid contribution -0.148 0.707 0.014 0.722 sum -4.836 -11.441 -1.329 12.491 Atomic orbital electron populations 1.69671 1.06786 1.29387 1.49954 1.26051 0.96585 1.02382 0.96017 0.84865 0.77916 0.76981 0.78518 1.20025 1.19346 1.19343 1.19732 0.92693 0.84214 1.50272 0.90596 1.41934 1.09346 1.04592 1.64293 1.20958 0.87966 0.86459 0.82040 1.90478 1.16397 1.88292 1.57690 1.21038 0.97086 0.90646 1.01629 0.87694 1.21570 0.97865 0.99936 0.95438 1.21468 0.97280 0.91645 1.04009 1.22242 0.97914 1.00154 0.97893 1.21753 0.89418 0.85409 0.98141 0.90790 1.86501 1.37554 1.17993 1.97545 1.21097 0.97060 0.92475 1.01674 0.91127 0.76780 0.93198 0.91449 0.89587 0.89868 0.92422 0.88470 0.75400 0.93412 0.93596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.72 13.05 21.66 0.28 -49.43 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 3 Si 0.99 43.45 29.55 68.60 2.03 45.48 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.34 -19.84 9.68 84.04 0.81 -19.02 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.74 16 9 N -0.57 -29.98 5.18 -306.99 -1.59 -31.57 16 10 C 0.44 21.99 7.11 87.66 0.62 22.62 16 11 O -0.64 -37.89 15.56 -3.04 -0.05 -37.94 16 12 C -0.08 -2.99 2.52 -11.54 -0.03 -3.02 16 13 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 14 C -0.11 -3.33 5.10 30.60 0.16 -3.18 16 15 C -0.11 -2.19 5.92 30.59 0.18 -2.01 16 16 C -0.14 -2.86 5.54 30.60 0.17 -2.69 16 17 C 0.11 2.74 3.47 30.59 0.11 2.85 16 18 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 19 O -0.59 -14.35 13.32 -148.98 -1.98 -16.33 16 20 C -0.08 -3.00 4.15 30.59 0.13 -2.87 16 21 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 22 H 0.40 19.81 7.32 -92.71 -0.68 19.14 16 23 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.07 2.10 7.56 -2.39 -0.02 2.08 16 25 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.10 1.28 8.14 -2.39 -0.02 1.27 16 29 H 0.40 5.15 9.08 -74.05 -0.67 4.48 16 30 H 0.05 1.88 8.10 -2.39 -0.02 1.86 16 31 H 0.05 1.84 8.10 -2.39 -0.02 1.82 16 Total: -1.00 -71.45 259.60 1.09 -70.36 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: -0.21 Total: 26.85 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 2.61 Total: -7.42 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -1.31 Total: -81.00 kcal Atomic # 8 Polarization: -52.23 SS G_CDS: -2.03 Total: -54.27 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -71.45 1.09 -70.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306709914.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.366 kcal (2) G-P(sol) polarization free energy of solvation -71.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds