Wall clock time and date at job start Mon Mar 30 2020 02:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 120.00033 * 2 1 4 4 H 1.48506 * 109.46828 * 269.99823 * 3 2 1 5 5 H 1.48508 * 109.47191 * 29.99599 * 3 2 1 6 6 H 1.48499 * 109.47437 * 149.99648 * 3 2 1 7 7 C 1.38951 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99744 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99923 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00108 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99800 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00161 * 179.97438 * 10 9 7 13 13 H 1.09001 * 109.46980 * 59.99654 * 12 10 9 14 14 C 1.52996 * 109.46946 * 299.99543 * 12 10 9 15 15 C 1.53002 * 109.46891 * 179.97438 * 14 12 10 16 16 C 1.52997 * 109.46978 * 60.00410 * 15 14 12 17 17 C 1.53006 * 109.47164 * 299.99874 * 16 15 14 18 18 H 1.08998 * 109.46505 * 299.99708 * 17 16 15 19 19 O 1.42895 * 109.47000 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47127 * 59.99836 * 17 16 15 21 21 H 0.96996 * 119.99812 * 0.02562 * 1 2 3 22 22 H 0.97005 * 120.00430 * 359.97438 * 9 7 2 23 23 H 1.08992 * 109.47554 * 299.99877 * 14 12 10 24 24 H 1.09004 * 109.47108 * 60.00127 * 14 12 10 25 25 H 1.09002 * 109.47097 * 180.02562 * 15 14 12 26 26 H 1.09001 * 109.47142 * 300.00176 * 15 14 12 27 27 H 1.09001 * 109.47375 * 59.99908 * 16 15 14 28 28 H 1.09000 * 109.47140 * 179.97438 * 16 15 14 29 29 H 0.96698 * 114.00355 * 60.00121 * 19 17 16 30 30 H 1.09002 * 109.47153 * 180.02562 * 20 17 16 31 31 H 1.09001 * 109.46832 * 60.00321 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0464 -1.4002 5 1 1.4456 2.6528 0.7000 6 1 3.5457 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 1 0.6168 -4.9208 -0.8886 14 6 0.3648 -4.9437 1.2508 15 6 -0.4007 -6.2685 1.2510 16 6 0.5931 -7.4317 1.2506 17 6 1.4723 -7.3509 0.0009 18 1 0.8452 -7.4085 -0.8887 19 8 2.4001 -8.4377 0.0002 20 6 2.2377 -6.0262 0.0006 21 1 -0.4850 0.8400 -0.0004 22 1 0.3534 -2.3906 0.0005 23 1 0.9918 -4.8858 2.1404 24 1 -0.3436 -4.1152 1.2509 25 1 -1.0273 -6.3259 2.1411 26 1 -1.0278 -6.3259 0.3613 27 1 1.2202 -7.3742 2.1403 28 1 0.0478 -8.3755 1.2512 29 1 1.9837 -9.3104 0.0001 30 1 2.8637 -5.9684 -0.8899 31 1 2.8648 -5.9687 0.8903 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306709915.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:30 Heat of formation + Delta-G solvation = -116.902728 kcal Electronic energy + Delta-G solvation = -14446.850047 eV Core-core repulsion = 11919.916083 eV Total energy + Delta-G solvation = -2526.933965 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.34642 -37.53995 -35.19309 -33.94749 -31.29211 -30.54138 -29.19819 -25.18486 -22.90469 -22.05350 -20.00612 -18.94626 -17.93461 -16.95674 -15.95163 -15.09964 -14.53404 -14.31259 -14.07411 -13.89430 -13.57754 -12.79210 -12.53115 -12.24416 -11.92553 -11.53183 -11.31755 -11.08245 -10.89064 -10.59680 -10.39079 -10.35699 -10.15668 -10.14280 -9.63023 -9.49888 -8.30183 -7.95319 -6.40850 -3.81421 3.18607 3.27155 3.33399 3.91557 4.12909 4.29185 4.79811 4.86510 5.08405 5.23841 5.32228 5.38592 5.51000 5.55435 5.67548 5.75148 5.81027 6.05139 6.15932 6.21761 6.35953 6.41109 6.54235 6.68260 6.77907 7.56325 7.72691 8.07505 8.62436 9.18883 9.56393 10.08026 10.76894 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.060324 B = 0.007049 C = 0.006485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.046802 B = 3971.425380 C = 4316.537719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.561 5.561 10 C 0.446 3.554 11 O -0.594 6.594 12 C -0.094 4.094 13 H 0.082 0.918 14 C -0.113 4.113 15 C -0.114 4.114 16 C -0.150 4.150 17 C 0.104 3.896 18 H 0.052 0.948 19 O -0.567 6.567 20 C -0.086 4.086 21 H 0.271 0.729 22 H 0.393 0.607 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.371 0.629 30 H 0.072 0.928 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.981 -11.893 1.317 12.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.196 5.196 10 C 0.232 3.768 11 O -0.480 6.480 12 C -0.116 4.116 13 H 0.100 0.900 14 C -0.151 4.151 15 C -0.152 4.152 16 C -0.188 4.188 17 C 0.045 3.955 18 H 0.070 0.930 19 O -0.372 6.372 20 C -0.124 4.124 21 H 0.081 0.919 22 H 0.226 0.774 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.217 0.783 30 H 0.091 0.909 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.870 -11.207 1.323 11.644 hybrid contribution -0.726 0.447 -0.010 0.852 sum -3.595 -10.760 1.313 11.420 Atomic orbital electron populations 1.69613 1.05932 1.28143 1.50633 1.25261 0.95630 0.99709 0.97309 0.85863 0.79252 0.80810 0.78396 1.20400 1.20921 1.19415 1.19736 0.93417 0.82362 1.47527 0.87947 1.41888 1.09206 1.04580 1.63929 1.19804 0.88104 0.84808 0.84128 1.90519 1.14016 1.87330 1.56098 1.21077 0.97065 0.94261 0.99160 0.90028 1.21581 0.98433 0.97289 0.97817 1.21483 0.97428 0.94314 1.01992 1.22277 0.98331 0.98537 0.99678 1.21902 0.89962 0.87589 0.96053 0.92964 1.86560 1.36648 1.16575 1.97443 1.21152 0.97248 0.89692 1.04262 0.91880 0.77376 0.91468 0.90966 0.91680 0.91830 0.91135 0.92235 0.78268 0.90899 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.66 13.05 55.50 0.72 -23.93 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.23 29.55 -169.99 -5.02 16.20 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.51 9.68 -14.94 -0.14 -8.66 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 9 N -0.56 -14.42 5.18 -10.97 -0.06 -14.48 16 10 C 0.45 10.80 7.11 -10.98 -0.08 10.72 16 11 O -0.59 -16.68 15.56 5.55 0.09 -16.59 16 12 C -0.09 -1.70 2.52 -91.77 -0.23 -1.93 16 13 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 14 C -0.11 -1.77 5.10 -26.73 -0.14 -1.91 16 15 C -0.11 -1.38 5.92 -26.73 -0.16 -1.54 16 16 C -0.15 -1.76 5.54 -26.73 -0.15 -1.91 16 17 C 0.10 1.40 3.47 -26.73 -0.09 1.31 16 18 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 19 O -0.57 -7.56 13.32 -35.23 -0.47 -8.03 16 20 C -0.09 -1.50 4.14 -26.73 -0.11 -1.61 16 21 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 22 H 0.39 9.62 7.32 -40.82 -0.30 9.32 16 23 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.07 1.16 7.57 -51.93 -0.39 0.76 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.37 3.04 9.08 45.56 0.41 3.45 16 30 H 0.07 1.39 8.10 -51.93 -0.42 0.97 16 31 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 LS Contribution 259.60 15.07 3.91 3.91 Total: -1.00 -32.01 259.60 -5.61 -37.62 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -3.59 Total: 10.31 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -1.20 Total: -5.02 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.67 Total: -38.41 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.38 Total: -24.62 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.01 -5.61 -37.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306709915.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.284 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds