Wall clock time and date at job start Mon Mar 30 2020 02:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99764 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00284 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00107 * 3 2 1 7 7 C 1.38956 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99983 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00025 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99970 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99953 * 0.27300 * 10 9 7 12 12 C 1.50706 * 119.99766 * 179.97438 * 10 9 7 13 13 H 1.09000 * 109.47161 * 299.99737 * 12 10 9 14 14 C 1.52997 * 109.47103 * 59.99771 * 12 10 9 15 15 C 1.52996 * 109.46975 * 179.97438 * 14 12 10 16 16 C 1.53002 * 109.47343 * 300.00008 * 15 14 12 17 17 C 1.52997 * 109.47092 * 60.00063 * 16 15 14 18 18 H 1.09001 * 109.47375 * 179.97438 * 17 16 15 19 19 O 1.42900 * 109.47084 * 59.99650 * 17 16 15 20 20 C 1.52999 * 109.46573 * 179.97438 * 12 10 9 21 21 H 0.97005 * 120.00019 * 359.97438 * 1 2 3 22 22 H 0.96999 * 119.99986 * 359.97438 * 9 7 2 23 23 H 1.09001 * 109.47375 * 299.99936 * 14 12 10 24 24 H 1.09000 * 109.47140 * 59.99953 * 14 12 10 25 25 H 1.09004 * 109.47368 * 60.00217 * 15 14 12 26 26 H 1.09004 * 109.47108 * 180.02562 * 15 14 12 27 27 H 1.09002 * 109.47067 * 179.97438 * 16 15 14 28 28 H 1.09000 * 109.47312 * 299.99943 * 16 15 14 29 29 H 0.96700 * 113.99855 * 60.00403 * 19 17 16 30 30 H 1.09000 * 109.47486 * 299.99934 * 20 12 10 31 31 H 1.09001 * 109.47362 * 60.00657 * 20 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0016 10 6 1.9973 -3.5579 -0.0016 11 8 3.2101 -3.5579 0.0043 12 6 1.2437 -4.8630 -0.0022 13 1 0.6167 -4.9209 0.8876 14 6 0.3645 -4.9437 -1.2517 15 6 -0.4001 -6.2689 -1.2526 16 6 0.5945 -7.4316 -1.2529 17 6 1.4737 -7.3509 -0.0033 18 1 2.1820 -8.1794 -0.0032 19 8 0.6518 -7.4273 1.1631 20 6 2.2379 -6.0259 -0.0027 21 1 -0.4850 0.8401 0.0004 22 1 0.3534 -2.3907 -0.0016 23 1 -0.3438 -4.1152 -1.2518 24 1 0.9915 -4.8858 -2.1415 25 1 -1.0270 -6.3273 -0.3629 26 1 -1.0261 -6.3266 -2.1431 27 1 0.0498 -8.3757 -1.2530 28 1 1.2215 -7.3733 -2.1426 29 1 0.1369 -8.2432 1.2287 30 1 2.8646 -5.9678 -0.8926 31 1 2.8645 -5.9686 0.8874 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306709916.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:32 Heat of formation + Delta-G solvation = -139.753285 kcal Electronic energy + Delta-G solvation = -14580.879276 eV Core-core repulsion = 12052.954437 eV Total energy + Delta-G solvation = -2527.924839 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.91293 -39.11394 -36.08062 -35.81694 -33.31044 -31.80727 -30.67731 -27.15259 -24.33914 -23.32033 -21.23795 -20.50632 -19.90090 -17.91851 -17.57599 -16.83706 -16.29403 -15.81693 -15.54726 -15.30245 -14.92588 -14.29482 -13.79916 -13.58099 -13.37602 -13.17407 -12.93791 -12.59588 -12.46760 -12.14162 -12.10483 -11.73656 -11.60427 -11.51457 -11.21713 -10.52576 -10.22957 -10.04597 -8.49210 -5.99010 1.36057 1.39279 1.52980 2.01836 2.28396 3.16592 3.18829 3.45938 3.78471 3.93757 4.00200 4.27050 4.30540 4.48528 4.49592 4.53632 4.71594 4.79510 5.05930 5.10933 5.22848 5.23630 5.31331 5.36630 5.39374 5.53403 5.97340 6.55583 7.06466 7.08750 7.52541 8.07648 8.68304 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.057906 B = 0.007323 C = 0.006928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.423391 B = 3822.785576 C = 4040.334280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.996 3.004 4 H -0.268 1.268 5 H -0.268 1.268 6 H -0.273 1.273 7 C -0.341 4.341 8 H 0.078 0.922 9 N -0.569 5.569 10 C 0.437 3.563 11 O -0.639 6.639 12 C -0.080 4.080 13 H 0.088 0.912 14 C -0.107 4.107 15 C -0.106 4.106 16 C -0.146 4.146 17 C 0.112 3.888 18 H 0.075 0.925 19 O -0.580 6.580 20 C -0.087 4.087 21 H 0.279 0.721 22 H 0.395 0.605 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.392 0.608 30 H 0.070 0.930 31 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.909 -13.792 -2.461 14.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.470 4.470 8 H 0.096 0.904 9 N -0.204 5.204 10 C 0.225 3.775 11 O -0.527 6.527 12 C -0.102 4.102 13 H 0.106 0.894 14 C -0.145 4.145 15 C -0.144 4.144 16 C -0.183 4.183 17 C 0.053 3.947 18 H 0.093 0.907 19 O -0.389 6.389 20 C -0.125 4.125 21 H 0.088 0.912 22 H 0.229 0.771 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.114 0.886 28 H 0.092 0.908 29 H 0.242 0.758 30 H 0.089 0.911 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.003 -13.040 -2.347 13.586 hybrid contribution -0.155 0.654 0.010 0.672 sum -3.158 -12.386 -2.337 12.994 Atomic orbital electron populations 1.69683 1.06911 1.29427 1.49991 1.26105 0.96594 1.02532 0.96019 0.84894 0.77828 0.76590 0.78791 1.19372 1.19279 1.19822 1.19734 0.92755 0.84217 1.50344 0.90385 1.41981 1.09277 1.04783 1.64400 1.21116 0.88053 0.86549 0.81781 1.90448 1.16153 1.88356 1.57783 1.20999 0.97426 0.90916 1.00837 0.89411 1.21519 0.97830 0.99589 0.95576 1.21420 0.97672 0.92360 1.02909 1.22245 0.98465 0.99514 0.98091 1.21747 0.91842 0.95820 0.85261 0.90695 1.86544 1.62169 1.46181 1.43977 1.21264 0.96502 0.92845 1.01938 0.91161 0.77051 0.92547 0.92644 0.91103 0.90207 0.88617 0.90760 0.75794 0.91092 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.19 13.05 21.66 0.28 -50.91 16 2 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 3 Si 1.00 44.08 29.55 68.60 2.03 46.10 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.34 -20.32 9.68 84.04 0.81 -19.51 16 8 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 9 N -0.57 -31.26 5.18 -306.98 -1.59 -32.85 16 10 C 0.44 22.60 7.11 87.66 0.62 23.22 16 11 O -0.64 -37.81 15.56 -3.05 -0.05 -37.86 16 12 C -0.08 -3.12 2.38 -11.54 -0.03 -3.14 16 13 H 0.09 3.42 7.68 -2.39 -0.02 3.40 16 14 C -0.11 -3.47 5.10 30.59 0.16 -3.32 16 15 C -0.11 -2.44 5.78 30.59 0.18 -2.26 16 16 C -0.15 -2.76 5.64 30.59 0.17 -2.59 16 17 C 0.11 2.62 3.77 30.58 0.12 2.74 16 18 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 19 O -0.58 -13.61 11.97 -148.98 -1.78 -15.39 16 20 C -0.09 -3.00 4.23 30.58 0.13 -2.87 16 21 H 0.28 14.42 8.31 -92.70 -0.77 13.65 16 22 H 0.40 20.82 7.32 -92.71 -0.68 20.14 16 23 H 0.06 1.94 7.56 -2.39 -0.02 1.92 16 24 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.07 1.62 7.68 -2.39 -0.02 1.60 16 26 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 27 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.39 5.01 9.08 -74.06 -0.67 4.34 16 30 H 0.07 2.49 8.10 -2.39 -0.02 2.47 16 31 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 Total: -1.00 -71.23 257.52 1.30 -69.92 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: -0.21 Total: 28.94 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 2.63 Total: -7.96 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -1.31 Total: -83.76 kcal Atomic # 8 Polarization: -51.42 SS G_CDS: -1.83 Total: -53.25 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -71.23 1.30 -69.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306709916.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.829 kcal (2) G-P(sol) polarization free energy of solvation -71.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds