Wall clock time and date at job start Mon Mar 30 2020 02:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 110.91299 * 2 1 4 4 O 1.42894 * 109.47865 * 303.90641 * 3 2 1 5 5 C 1.55158 * 111.00773 * 123.90674 * 2 1 3 6 6 C 1.54326 * 102.94172 * 82.57276 * 5 2 1 7 7 N 1.47031 * 107.27084 * 22.19139 * 6 5 2 8 8 C 1.34771 * 125.64470 * 181.02536 * 7 6 5 9 9 O 1.21688 * 119.99704 * 180.02562 * 8 7 6 10 10 C 1.46374 * 120.00357 * 0.02562 * 8 7 6 11 11 H 1.08004 * 120.00031 * 350.74837 * 10 8 7 12 12 C 1.40045 * 120.00248 * 170.74992 * 10 8 7 13 13 N 1.30670 * 120.00316 * 166.26431 * 12 10 8 14 14 Si 1.86806 * 119.99790 * 346.26168 * 12 10 8 15 15 H 1.48498 * 109.47282 * 90.00168 * 14 12 10 16 16 H 1.48507 * 109.46812 * 210.00271 * 14 12 10 17 17 H 1.48501 * 109.46969 * 330.00002 * 14 12 10 18 18 C 1.47423 * 108.70349 * 1.28982 * 7 6 5 19 19 H 1.09005 * 109.46733 * 296.09165 * 1 2 3 20 20 H 1.08998 * 109.47307 * 56.09185 * 1 2 3 21 21 H 1.09004 * 109.46905 * 176.09519 * 1 2 3 22 22 H 1.09003 * 109.47048 * 63.90960 * 3 2 1 23 23 H 1.09003 * 109.46864 * 183.90236 * 3 2 1 24 24 H 0.96693 * 114.00625 * 180.02562 * 4 3 2 25 25 H 1.08994 * 110.71784 * 324.21204 * 5 2 1 26 26 H 1.08995 * 110.71494 * 200.93370 * 5 2 1 27 27 H 1.08997 * 109.88129 * 262.77858 * 6 5 2 28 28 H 1.08990 * 109.88313 * 141.60987 * 6 5 2 29 29 H 0.97001 * 119.99965 * 1.84761 * 13 12 10 30 30 H 1.09000 * 110.36830 * 94.48045 * 18 7 6 31 31 H 1.09001 * 110.36485 * 216.80472 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0761 1.4292 0.0000 4 8 1.5442 2.1425 -1.1181 5 6 2.0863 -0.8080 1.2021 6 6 2.0287 -2.2647 0.6958 7 7 2.0139 -2.2158 -0.7736 8 6 1.9471 -3.2827 -1.5943 9 8 1.9419 -3.1229 -2.8007 10 6 1.8808 -4.6336 -1.0347 11 1 2.0352 -4.7882 0.0230 12 6 1.6171 -5.7258 -1.8707 13 7 1.8196 -6.9426 -1.4396 14 14 0.9760 -5.4431 -3.6024 15 1 2.1208 -5.3191 -4.5401 16 1 0.1254 -6.5905 -4.0087 17 1 0.1721 -4.1949 -3.6349 18 6 2.0908 -0.8068 -1.2005 19 1 -0.3633 0.4520 0.9230 20 1 -0.3634 0.5733 -0.8529 21 1 -0.3633 -1.0253 -0.0700 22 1 1.7836 1.9299 0.9230 23 1 3.1636 1.4026 -0.0699 24 1 1.8488 3.0580 -1.1816 25 1 1.4525 -0.6794 2.0795 26 1 3.1134 -0.5161 1.4207 27 1 1.1220 -2.7480 1.0597 28 1 2.9064 -2.8117 1.0397 29 1 2.1269 -7.0905 -0.5315 30 1 3.1253 -0.5264 -1.3990 31 1 1.4764 -0.6447 -2.0862 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306925632.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:32 Heat of formation + Delta-G solvation = -106.983428 kcal Electronic energy + Delta-G solvation = -14743.762063 eV Core-core repulsion = 12217.258231 eV Total energy + Delta-G solvation = -2526.503832 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.35315 -37.13643 -35.80093 -32.85497 -32.08200 -28.99620 -27.14443 -26.46654 -24.54532 -22.22686 -19.31959 -18.87809 -17.56963 -17.04992 -15.61622 -15.50845 -14.83472 -14.21684 -13.69107 -13.64456 -13.20004 -12.72537 -12.48880 -12.22632 -12.06489 -11.71524 -11.45225 -11.31864 -10.61224 -10.55042 -10.52158 -10.31108 -9.97957 -9.93111 -9.21379 -8.86490 -7.95938 -7.44419 -6.97543 -4.86143 3.61294 3.66441 4.02962 4.14328 4.32556 4.38151 4.61696 4.75114 4.89092 5.07621 5.36813 5.41608 5.49635 5.54568 5.62641 5.79987 5.85366 6.13296 6.23214 6.29372 6.31883 6.43599 6.54188 6.64184 7.12983 7.60727 7.75855 7.82363 8.22061 8.87863 9.12671 10.12330 10.35371 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.048252 B = 0.008987 C = 0.008139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.153328 B = 3114.704693 C = 3439.464025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.078 4.078 3 C 0.095 3.905 4 O -0.567 6.567 5 C -0.122 4.122 6 C 0.124 3.876 7 N -0.638 5.638 8 C 0.568 3.432 9 O -0.616 6.616 10 C -0.596 4.596 11 H 0.071 0.929 12 C 0.064 3.936 13 N -0.832 5.832 14 Si 1.119 2.881 15 H -0.287 1.287 16 H -0.318 1.318 17 H -0.277 1.277 18 C 0.129 3.871 19 H 0.049 0.951 20 H 0.063 0.937 21 H 0.061 0.939 22 H 0.045 0.955 23 H 0.046 0.954 24 H 0.374 0.626 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.277 0.723 30 H 0.046 0.954 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.163 14.697 6.745 16.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.078 4.078 3 C 0.017 3.983 4 O -0.371 6.371 5 C -0.160 4.160 6 C -0.001 4.001 7 N -0.374 5.374 8 C 0.378 3.622 9 O -0.508 6.508 10 C -0.632 4.632 11 H 0.090 0.910 12 C -0.154 4.154 13 N -0.459 5.459 14 Si 0.950 3.050 15 H -0.214 1.214 16 H -0.250 1.250 17 H -0.204 1.204 18 C 0.006 3.994 19 H 0.068 0.932 20 H 0.082 0.918 21 H 0.080 0.920 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.220 0.780 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.874 13.322 4.695 14.152 hybrid contribution 1.002 1.309 1.998 2.591 sum 0.128 14.631 6.693 16.090 Atomic orbital electron populations 1.21601 0.93068 1.02387 1.01392 1.21821 0.96942 0.92576 0.96511 1.22087 0.96409 0.91692 0.88155 1.86545 1.73320 1.28309 1.48963 1.22722 1.01006 0.95291 0.97023 1.21567 1.00979 0.94802 0.82714 1.48240 1.79003 1.04912 1.05230 1.18150 0.75634 0.83859 0.84559 1.90227 1.60188 1.85049 1.15331 1.22007 1.53435 0.90375 0.97430 0.91046 1.27074 0.90375 0.91033 1.06924 1.70644 1.33711 1.22395 1.19190 0.82635 0.77128 0.72973 0.72215 1.21392 1.24961 1.20368 1.21903 0.98961 0.82317 0.96267 0.93200 0.91818 0.92036 0.93685 0.93600 0.77958 0.90524 0.91110 0.92414 0.92773 0.91188 0.93594 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.45 37.16 0.31 -1.59 16 2 C -0.08 -1.16 0.75 -152.24 -0.11 -1.27 16 3 C 0.09 1.11 6.02 37.16 0.22 1.33 16 4 O -0.57 -6.88 12.75 -35.23 -0.45 -7.32 16 5 C -0.12 -1.69 5.92 -24.89 -0.15 -1.83 16 6 C 0.12 2.30 5.75 -3.06 -0.02 2.28 16 7 N -0.64 -14.74 3.31 -172.03 -0.57 -15.31 16 8 C 0.57 16.06 7.50 -12.99 -0.10 15.96 16 9 O -0.62 -18.86 12.58 5.20 0.07 -18.79 16 10 C -0.60 -17.42 9.41 -35.63 -0.34 -17.76 16 11 H 0.07 2.05 7.41 -52.48 -0.39 1.66 16 12 C 0.06 1.89 5.52 -17.37 -0.10 1.79 16 13 N -0.83 -24.49 13.65 55.55 0.76 -23.73 16 14 Si 1.12 30.36 26.36 -169.99 -4.48 25.88 16 15 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 16 H -0.32 -8.18 7.11 56.52 0.40 -7.78 16 17 H -0.28 -7.75 6.54 56.52 0.37 -7.38 16 18 C 0.13 2.55 5.74 -2.41 -0.01 2.54 16 19 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 20 H 0.06 0.99 7.57 -51.93 -0.39 0.59 16 21 H 0.06 1.05 7.91 -51.93 -0.41 0.64 16 22 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.05 0.50 8.07 -51.93 -0.42 0.08 16 24 H 0.37 2.60 9.12 45.56 0.42 3.02 16 25 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 26 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.28 7.84 8.72 -40.82 -0.36 7.49 16 30 H 0.05 0.88 7.99 -51.93 -0.41 0.47 16 31 H 0.07 1.56 7.95 -51.93 -0.41 1.15 16 LS Contribution 257.85 15.07 3.89 3.89 Total: -1.00 -34.27 257.85 -4.81 -39.08 By element: Atomic # 1 Polarization: -1.40 SS G_CDS: -3.73 Total: -5.13 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -0.28 Total: 1.45 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.19 Total: -39.04 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.38 Total: -26.12 kcal Atomic # 14 Polarization: 30.36 SS G_CDS: -4.48 Total: 25.88 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -34.27 -4.81 -39.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306925632.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.905 kcal (2) G-P(sol) polarization free energy of solvation -34.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds