Wall clock time and date at job start Mon Mar 30 2020 02:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 110.91299 * 2 1 4 4 O 1.42894 * 109.47865 * 303.90641 * 3 2 1 5 5 C 1.55158 * 111.00773 * 123.90674 * 2 1 3 6 6 C 1.54326 * 102.94172 * 82.57276 * 5 2 1 7 7 N 1.47031 * 107.27084 * 22.19139 * 6 5 2 8 8 C 1.34771 * 125.64470 * 181.02536 * 7 6 5 9 9 O 1.21688 * 119.99704 * 180.02562 * 8 7 6 10 10 C 1.46374 * 120.00357 * 0.02562 * 8 7 6 11 11 H 1.08004 * 120.00031 * 350.74837 * 10 8 7 12 12 C 1.40045 * 120.00248 * 170.74992 * 10 8 7 13 13 N 1.30670 * 120.00316 * 166.26431 * 12 10 8 14 14 Si 1.86806 * 119.99790 * 346.26168 * 12 10 8 15 15 H 1.48498 * 109.47282 * 90.00168 * 14 12 10 16 16 H 1.48507 * 109.46812 * 210.00271 * 14 12 10 17 17 H 1.48501 * 109.46969 * 330.00002 * 14 12 10 18 18 C 1.47423 * 108.70349 * 1.28982 * 7 6 5 19 19 H 1.09005 * 109.46733 * 296.09165 * 1 2 3 20 20 H 1.08998 * 109.47307 * 56.09185 * 1 2 3 21 21 H 1.09004 * 109.46905 * 176.09519 * 1 2 3 22 22 H 1.09003 * 109.47048 * 63.90960 * 3 2 1 23 23 H 1.09003 * 109.46864 * 183.90236 * 3 2 1 24 24 H 0.96693 * 114.00625 * 180.02562 * 4 3 2 25 25 H 1.08994 * 110.71784 * 324.21204 * 5 2 1 26 26 H 1.08995 * 110.71494 * 200.93370 * 5 2 1 27 27 H 1.08997 * 109.88129 * 262.77858 * 6 5 2 28 28 H 1.08990 * 109.88313 * 141.60987 * 6 5 2 29 29 H 0.97001 * 119.99965 * 1.84761 * 13 12 10 30 30 H 1.09000 * 110.36830 * 94.48045 * 18 7 6 31 31 H 1.09001 * 110.36485 * 216.80472 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0761 1.4292 0.0000 4 8 1.5442 2.1425 -1.1181 5 6 2.0863 -0.8080 1.2021 6 6 2.0287 -2.2647 0.6958 7 7 2.0139 -2.2158 -0.7736 8 6 1.9471 -3.2827 -1.5943 9 8 1.9419 -3.1229 -2.8007 10 6 1.8808 -4.6336 -1.0347 11 1 2.0352 -4.7882 0.0230 12 6 1.6171 -5.7258 -1.8707 13 7 1.8196 -6.9426 -1.4396 14 14 0.9760 -5.4431 -3.6024 15 1 2.1208 -5.3191 -4.5401 16 1 0.1254 -6.5905 -4.0087 17 1 0.1721 -4.1949 -3.6349 18 6 2.0908 -0.8068 -1.2005 19 1 -0.3633 0.4520 0.9230 20 1 -0.3634 0.5733 -0.8529 21 1 -0.3633 -1.0253 -0.0700 22 1 1.7836 1.9299 0.9230 23 1 3.1636 1.4026 -0.0699 24 1 1.8488 3.0580 -1.1816 25 1 1.4525 -0.6794 2.0795 26 1 3.1134 -0.5161 1.4207 27 1 1.1220 -2.7480 1.0597 28 1 2.9064 -2.8117 1.0397 29 1 2.1269 -7.0905 -0.5315 30 1 3.1253 -0.5264 -1.3990 31 1 1.4764 -0.6447 -2.0862 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306925632.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:31 Heat of formation + Delta-G solvation = -134.388964 kcal Electronic energy + Delta-G solvation = -14744.950456 eV Core-core repulsion = 12217.258231 eV Total energy + Delta-G solvation = -2527.692225 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.88574 -38.85874 -37.08443 -35.13607 -33.62423 -30.41287 -29.01765 -27.72346 -26.16905 -23.72266 -21.32673 -20.20607 -19.40680 -18.13133 -17.50888 -17.00267 -16.40947 -15.91045 -15.47980 -14.99929 -14.85794 -14.48120 -14.12479 -13.79150 -13.54257 -13.31218 -12.91703 -12.82581 -12.62658 -12.17765 -11.79415 -11.74619 -11.49883 -11.37810 -11.14696 -10.81511 -10.18823 -9.35672 -9.25212 -7.14949 1.39650 1.47069 1.88980 2.11314 2.33219 2.66837 3.20682 3.24477 3.60716 3.68715 4.01776 4.26457 4.31205 4.41012 4.58747 4.66602 4.70722 4.74943 4.87901 4.92702 5.07843 5.10840 5.19889 5.29006 5.42958 5.48191 5.73656 6.07777 6.59661 7.01585 7.09196 7.93596 8.06130 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.048252 B = 0.008987 C = 0.008139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.153328 B = 3114.704693 C = 3439.464025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.071 4.071 3 C 0.099 3.901 4 O -0.592 6.592 5 C -0.104 4.104 6 C 0.113 3.887 7 N -0.644 5.644 8 C 0.558 3.442 9 O -0.648 6.648 10 C -0.612 4.612 11 H 0.068 0.932 12 C 0.033 3.967 13 N -0.842 5.842 14 Si 1.150 2.850 15 H -0.292 1.292 16 H -0.294 1.294 17 H -0.297 1.297 18 C 0.123 3.877 19 H 0.084 0.916 20 H 0.051 0.949 21 H 0.030 0.970 22 H 0.081 0.919 23 H 0.057 0.943 24 H 0.397 0.603 25 H 0.111 0.889 26 H 0.096 0.904 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.279 0.721 30 H 0.051 0.949 31 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.005 16.712 8.386 18.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.072 4.072 3 C 0.022 3.978 4 O -0.401 6.401 5 C -0.142 4.142 6 C -0.010 4.010 7 N -0.377 5.377 8 C 0.366 3.634 9 O -0.543 6.543 10 C -0.649 4.649 11 H 0.087 0.913 12 C -0.182 4.182 13 N -0.470 5.470 14 Si 0.980 3.020 15 H -0.219 1.219 16 H -0.223 1.223 17 H -0.224 1.224 18 C 0.000 4.000 19 H 0.103 0.897 20 H 0.070 0.930 21 H 0.049 0.951 22 H 0.099 0.901 23 H 0.076 0.924 24 H 0.247 0.753 25 H 0.129 0.871 26 H 0.115 0.885 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.699 15.362 6.383 16.650 hybrid contribution 0.963 0.751 1.519 1.949 sum 0.264 16.113 7.902 17.948 Atomic orbital electron populations 1.21574 0.93310 1.00529 1.02720 1.21854 0.96735 0.94417 0.94201 1.22059 0.96823 0.89459 0.89502 1.86493 1.73859 1.30266 1.49452 1.22713 1.03395 0.90832 0.97227 1.21866 1.00480 0.98747 0.79939 1.48173 1.77057 1.05355 1.07120 1.18131 0.75603 0.85065 0.84597 1.90191 1.61412 1.85940 1.16755 1.22146 1.53969 0.91376 0.97361 0.91336 1.27731 0.90574 0.91224 1.08694 1.70647 1.34463 1.22406 1.19455 0.82222 0.76670 0.72721 0.70414 1.21934 1.22333 1.22437 1.22123 0.99033 0.81214 0.97645 0.89716 0.92960 0.95121 0.90139 0.92436 0.75316 0.87066 0.88520 0.93164 0.93063 0.91079 0.93097 0.94346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.45 8.45 71.98 0.61 -2.84 16 2 C -0.07 -1.92 0.75 -50.71 -0.04 -1.96 16 3 C 0.10 1.89 6.02 71.98 0.43 2.32 16 4 O -0.59 -12.58 12.75 -148.98 -1.90 -14.48 16 5 C -0.10 -2.45 5.92 31.78 0.19 -2.26 16 6 C 0.11 4.04 5.75 86.73 0.50 4.54 16 7 N -0.64 -29.84 3.31 -816.41 -2.70 -32.55 16 8 C 0.56 32.21 7.50 86.36 0.65 32.86 16 9 O -0.65 -40.72 12.58 -4.31 -0.05 -40.78 16 10 C -0.61 -36.41 9.41 24.83 0.23 -36.17 16 11 H 0.07 4.00 7.41 -2.91 -0.02 3.98 16 12 C 0.03 1.97 5.52 85.30 0.47 2.45 16 13 N -0.84 -49.70 13.65 21.83 0.30 -49.40 16 14 Si 1.15 62.43 26.36 68.60 1.81 64.24 16 15 H -0.29 -15.96 7.11 99.48 0.71 -15.25 16 16 H -0.29 -14.58 7.11 99.48 0.71 -13.88 16 17 H -0.30 -16.92 6.54 99.48 0.65 -16.27 16 18 C 0.12 4.80 5.74 86.94 0.50 5.30 16 19 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 20 H 0.05 1.56 7.57 -2.39 -0.02 1.54 16 21 H 0.03 1.01 7.91 -2.39 -0.02 1.00 16 22 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.06 0.98 8.07 -2.39 -0.02 0.96 16 24 H 0.40 4.18 9.12 -74.06 -0.68 3.51 16 25 H 0.11 1.95 8.04 -2.39 -0.02 1.93 16 26 H 0.10 1.85 8.04 -2.39 -0.02 1.83 16 27 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.28 15.85 8.72 -92.71 -0.81 15.04 16 30 H 0.05 1.92 7.99 -2.39 -0.02 1.90 16 31 H 0.04 1.73 7.95 -2.39 -0.02 1.71 16 Total: -1.00 -75.65 257.85 1.34 -74.31 By element: Atomic # 1 Polarization: -5.93 SS G_CDS: 0.35 Total: -5.58 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 3.54 Total: 4.23 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -2.40 Total: -81.95 kcal Atomic # 8 Polarization: -53.31 SS G_CDS: -1.95 Total: -55.26 kcal Atomic # 14 Polarization: 62.43 SS G_CDS: 1.81 Total: 64.24 kcal Total: -75.65 1.34 -74.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306925632.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.074 kcal (2) G-P(sol) polarization free energy of solvation -75.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds