Wall clock time and date at job start Mon Mar 30 2020 02:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 110.29023 * 2 1 4 4 O 1.42897 * 109.46674 * 60.68275 * 3 2 1 5 5 C 1.54620 * 110.41360 * 237.80948 * 2 1 3 6 6 C 1.54597 * 102.91034 * 262.76226 * 5 2 1 7 7 N 1.48114 * 103.42399 * 322.86792 * 6 5 2 8 8 C 1.34778 * 127.03504 * 219.28600 * 7 6 5 9 9 O 1.21689 * 119.99727 * 179.68293 * 8 7 6 10 10 C 1.46369 * 119.99943 * 359.68679 * 8 7 6 11 11 H 1.08003 * 120.00405 * 6.23461 * 10 8 7 12 12 C 1.40058 * 120.00169 * 186.24429 * 10 8 7 13 13 N 1.30668 * 120.00075 * 184.64487 * 12 10 8 14 14 Si 1.86799 * 119.99721 * 4.64105 * 12 10 8 15 15 H 1.48497 * 109.47265 * 180.02562 * 14 12 10 16 16 H 1.48497 * 109.47432 * 60.00556 * 14 12 10 17 17 H 1.48509 * 109.47174 * 300.00125 * 14 12 10 18 18 C 1.47483 * 105.93252 * 39.02373 * 7 6 5 19 19 H 1.08992 * 109.47166 * 299.32101 * 1 2 3 20 20 H 1.09003 * 109.46905 * 59.31793 * 1 2 3 21 21 H 1.09007 * 109.47234 * 179.31500 * 1 2 3 22 22 H 1.08998 * 109.46946 * 180.67738 * 3 2 1 23 23 H 1.09002 * 109.47136 * 300.68159 * 3 2 1 24 24 H 0.96703 * 113.99444 * 180.02562 * 4 3 2 25 25 H 1.08996 * 110.74124 * 21.24751 * 5 2 1 26 26 H 1.08990 * 110.74182 * 144.39806 * 5 2 1 27 27 H 1.09000 * 110.61694 * 204.35338 * 6 5 2 28 28 H 1.09003 * 110.55030 * 81.34697 * 6 5 2 29 29 H 0.96998 * 120.00191 * 354.88115 * 13 12 10 30 30 H 1.09001 * 109.91462 * 94.13951 * 18 7 6 31 31 H 1.09002 * 109.91791 * 215.41572 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0606 1.4351 0.0000 4 8 1.6070 2.1105 1.1747 5 6 2.0693 -0.7720 -1.2263 6 6 2.3677 -2.1743 -0.6479 7 7 2.8825 -1.8836 0.7102 8 6 3.8947 -2.5070 1.3453 9 8 4.2170 -2.1577 2.4655 10 6 4.6063 -3.6040 0.6875 11 1 4.3893 -3.8481 -0.3419 12 6 5.5684 -4.3374 1.3932 13 7 6.2679 -5.2560 0.7814 14 14 5.8518 -4.0021 3.2089 15 1 6.9153 -4.9044 3.7188 16 1 4.5938 -4.2454 3.9595 17 1 6.2721 -2.5895 3.3918 18 6 2.0650 -0.7682 1.2228 19 1 -0.3633 0.5032 0.8959 20 1 -0.3633 0.5244 -0.8838 21 1 -0.3634 -1.0276 -0.0123 22 1 3.1504 1.4195 -0.0121 23 1 1.6948 1.9577 -0.8838 24 1 1.9059 3.0278 1.2411 25 1 1.3136 -0.8286 -2.0097 26 1 2.9807 -0.3086 -1.6040 27 1 3.1244 -2.6828 -1.2453 28 1 1.4553 -2.7682 -0.5943 29 1 6.0706 -5.4819 -0.1410 30 1 1.2331 -1.1569 1.8101 31 1 2.6794 -0.1088 1.8359 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306925633.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:34 Heat of formation + Delta-G solvation = -107.012528 kcal Electronic energy + Delta-G solvation = -14738.136245 eV Core-core repulsion = 12211.631151 eV Total energy + Delta-G solvation = -2526.505094 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.37274 -37.14512 -35.77559 -32.87624 -32.24087 -28.96915 -27.09638 -26.45666 -24.50288 -22.43077 -19.40003 -18.78550 -17.55911 -17.00043 -15.75096 -15.47261 -14.54823 -14.48510 -13.99951 -13.48299 -13.09280 -12.66085 -12.43163 -12.30634 -12.15372 -11.63014 -11.59490 -11.36064 -10.63360 -10.51585 -10.35984 -10.27155 -10.16728 -9.89139 -9.12391 -8.94709 -7.91071 -7.58591 -6.97737 -4.90061 3.60551 3.69546 4.04730 4.20656 4.33286 4.37047 4.64046 4.77647 4.89744 5.12171 5.38593 5.45830 5.49038 5.59020 5.63798 5.80995 5.82840 6.03399 6.16709 6.20360 6.27798 6.45189 6.50043 6.56055 7.04539 7.64881 7.72926 7.77866 8.18488 8.85421 9.10118 10.06841 10.35081 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046496 B = 0.009067 C = 0.008144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.062658 B = 3087.425816 C = 3437.483901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.077 4.077 3 C 0.092 3.908 4 O -0.569 6.569 5 C -0.125 4.125 6 C 0.116 3.884 7 N -0.639 5.639 8 C 0.570 3.430 9 O -0.615 6.615 10 C -0.593 4.593 11 H 0.072 0.928 12 C 0.061 3.939 13 N -0.834 5.834 14 Si 1.128 2.872 15 H -0.321 1.321 16 H -0.291 1.291 17 H -0.281 1.281 18 C 0.126 3.874 19 H 0.062 0.938 20 H 0.051 0.949 21 H 0.056 0.944 22 H 0.047 0.953 23 H 0.043 0.957 24 H 0.375 0.625 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.277 0.723 30 H 0.049 0.951 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.494 10.670 -5.304 15.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.078 4.078 3 C 0.014 3.986 4 O -0.373 6.373 5 C -0.164 4.164 6 C -0.008 4.008 7 N -0.375 5.375 8 C 0.381 3.619 9 O -0.508 6.508 10 C -0.629 4.629 11 H 0.090 0.910 12 C -0.157 4.157 13 N -0.461 5.461 14 Si 0.961 3.039 15 H -0.253 1.253 16 H -0.218 1.218 17 H -0.208 1.208 18 C 0.001 3.999 19 H 0.081 0.919 20 H 0.070 0.930 21 H 0.075 0.925 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.221 0.779 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.609 9.766 -3.393 13.454 hybrid contribution -0.862 0.971 -1.887 2.291 sum -9.471 10.737 -5.280 15.260 Atomic orbital electron populations 1.21754 0.93452 1.01622 1.01815 1.21531 0.96298 0.93345 0.96581 1.22216 0.97499 0.92135 0.86741 1.86502 1.77555 1.29239 1.44049 1.22753 1.00896 0.96604 0.96132 1.22077 0.98541 0.94969 0.85217 1.48595 1.35578 1.36412 1.16870 1.18231 0.77174 0.82102 0.84356 1.90157 1.69180 1.69426 1.22012 1.22041 1.23800 1.16461 1.00612 0.90962 1.27155 0.89525 0.90771 1.08223 1.70659 1.34086 1.27042 1.14344 0.82414 0.75049 0.75151 0.71302 1.25311 1.21818 1.20779 1.21707 0.94534 0.89168 0.94442 0.91852 0.92996 0.92540 0.93443 0.93885 0.77881 0.90627 0.91106 0.90236 0.92773 0.91263 0.93280 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 8.07 37.16 0.30 -1.34 16 2 C -0.08 -1.14 0.77 -153.13 -0.12 -1.26 16 3 C 0.09 1.20 5.66 37.16 0.21 1.41 16 4 O -0.57 -7.38 12.59 -35.23 -0.44 -7.83 16 5 C -0.13 -1.79 6.16 -25.04 -0.15 -1.94 16 6 C 0.12 2.12 6.90 -2.31 -0.02 2.11 16 7 N -0.64 -14.72 3.29 -171.64 -0.57 -15.29 16 8 C 0.57 16.05 7.64 -12.99 -0.10 15.96 16 9 O -0.61 -18.75 12.41 5.20 0.06 -18.68 16 10 C -0.59 -17.20 9.48 -35.63 -0.34 -17.54 16 11 H 0.07 2.04 6.62 -52.48 -0.35 1.70 16 12 C 0.06 1.79 5.52 -17.36 -0.10 1.69 16 13 N -0.83 -24.44 13.64 55.55 0.76 -23.68 16 14 Si 1.13 30.76 25.99 -169.99 -4.42 26.34 16 15 H -0.32 -8.36 7.11 56.52 0.40 -7.95 16 16 H -0.29 -7.99 7.11 56.52 0.40 -7.59 16 17 H -0.28 -7.90 6.78 56.52 0.38 -7.51 16 18 C 0.13 2.48 6.09 -2.98 -0.02 2.46 16 19 H 0.06 0.83 7.78 -51.93 -0.40 0.43 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 23 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.37 3.04 9.12 45.56 0.42 3.46 16 25 H 0.08 0.87 7.86 -51.93 -0.41 0.46 16 26 H 0.07 1.01 7.86 -51.93 -0.41 0.60 16 27 H 0.08 1.52 6.61 -51.93 -0.34 1.17 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.28 7.76 8.72 -40.82 -0.36 7.41 16 30 H 0.05 0.97 7.68 -51.93 -0.40 0.57 16 31 H 0.07 1.53 7.36 -51.93 -0.38 1.15 16 LS Contribution 255.51 15.07 3.85 3.85 Total: -1.00 -34.02 255.51 -4.64 -38.66 By element: Atomic # 1 Polarization: -1.37 SS G_CDS: -3.56 Total: -4.93 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -0.33 Total: 1.55 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.19 Total: -38.97 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.38 Total: -26.51 kcal Atomic # 14 Polarization: 30.76 SS G_CDS: -4.42 Total: 26.34 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -34.02 -4.64 -38.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306925633.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.351 kcal (2) G-P(sol) polarization free energy of solvation -34.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds