Wall clock time and date at job start Mon Mar 30 2020 02:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.98840 * 2 1 4 4 C 1.54094 * 109.87999 * 238.91911 * 2 1 3 5 5 C 1.54812 * 104.18887 * 238.54363 * 4 2 1 6 6 C 1.54994 * 102.08998 * 339.11621 * 5 4 2 7 7 H 1.08998 * 110.62386 * 278.52588 * 6 5 4 8 8 C 1.50706 * 110.61841 * 155.52311 * 6 5 4 9 9 O 1.21285 * 120.00075 * 249.47979 * 8 6 5 10 10 N 1.34778 * 119.99775 * 69.47706 * 8 6 5 11 11 C 1.37091 * 119.99772 * 180.02562 * 10 8 6 12 12 H 1.08000 * 120.00433 * 0.02562 * 11 10 8 13 13 C 1.38951 * 119.99595 * 180.02562 * 11 10 8 14 14 N 1.31411 * 120.00314 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 119.99855 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47113 * 59.99605 * 15 13 11 17 17 H 1.48501 * 109.47265 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46984 * 300.00022 * 15 13 11 19 19 O 1.43740 * 109.88213 * 121.08049 * 2 1 3 20 20 H 1.09003 * 109.47065 * 300.36718 * 1 2 3 21 21 H 1.08994 * 109.47207 * 60.37015 * 1 2 3 22 22 H 1.08999 * 109.46879 * 180.37013 * 1 2 3 23 23 H 1.08999 * 109.47529 * 179.63336 * 3 2 1 24 24 H 1.09008 * 109.47356 * 299.63303 * 3 2 1 25 25 H 1.09002 * 109.47014 * 59.63044 * 3 2 1 26 26 H 1.09001 * 110.49005 * 119.86551 * 4 2 1 27 27 H 1.09003 * 110.60037 * 357.27570 * 4 2 1 28 28 H 1.09004 * 110.90657 * 220.92264 * 5 4 2 29 29 H 1.08995 * 110.91171 * 97.31446 * 5 4 2 30 30 H 0.96999 * 119.99540 * 0.02562 * 10 8 6 31 31 H 0.96996 * 119.99914 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0530 1.4378 0.0000 4 6 2.0540 -0.7481 -1.2411 5 6 2.9196 -1.8913 -0.6576 6 6 3.2380 -1.3640 0.7646 7 1 4.0685 -0.6587 0.7356 8 6 3.5430 -2.5069 1.6984 9 8 2.7655 -2.7893 2.5855 10 7 4.6797 -3.2153 1.5478 11 6 4.9569 -4.2552 2.3969 12 1 4.2642 -4.5072 3.1863 13 6 6.1290 -4.9851 2.2419 14 7 6.9716 -4.6789 1.2811 15 14 6.5071 -6.4018 3.3993 16 1 5.4331 -7.4224 3.2999 17 1 7.8072 -7.0139 3.0245 18 1 6.5813 -5.8957 4.7934 19 8 2.0189 -0.6978 1.1577 20 1 -0.3633 0.5195 0.8867 21 1 -0.3633 0.5080 -0.8932 22 1 -0.3633 -1.0276 0.0066 23 1 3.1429 1.4281 0.0066 24 1 1.6997 1.9530 -0.8933 25 1 1.6889 1.9569 0.8867 26 1 2.6619 -0.0857 -1.8574 27 1 1.2260 -1.1547 -1.8217 28 1 3.8333 -2.0222 -1.2375 29 1 2.3542 -2.8219 -0.6099 30 1 5.3016 -2.9891 0.8386 31 1 7.7897 -5.1887 1.1727 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306928423.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:03 Heat of formation + Delta-G solvation = -95.677914 kcal Electronic energy + Delta-G solvation = -14527.947971 eV Core-core repulsion = 12001.934383 eV Total energy + Delta-G solvation = -2526.013588 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.78122 -37.59403 -33.95513 -32.75579 -31.83543 -30.92452 -27.34346 -26.69045 -24.35010 -21.93184 -19.87378 -19.23454 -17.93002 -16.48013 -15.71637 -14.91261 -14.78410 -14.09123 -13.92444 -13.51155 -13.39157 -13.02132 -12.51211 -12.16224 -11.97108 -11.57684 -11.50298 -11.44145 -11.10877 -10.97768 -10.50946 -10.47692 -10.42608 -10.21648 -9.52388 -9.36672 -8.26419 -7.97626 -6.42088 -3.83067 3.20620 3.26334 3.30813 3.77723 3.97025 4.26326 4.70329 4.88957 4.94469 5.18075 5.25963 5.28979 5.42706 5.52568 5.64494 5.70164 5.83306 5.90598 5.96252 6.00192 6.17121 6.26130 6.29186 6.38650 6.41566 7.32366 7.55040 8.04943 8.61132 9.17243 9.52230 10.04461 10.75572 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.065532 B = 0.007008 C = 0.006712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.171497 B = 3994.726521 C = 4170.357373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.089 3.911 3 C -0.162 4.162 4 C -0.144 4.144 5 C -0.142 4.142 6 C 0.070 3.930 7 H 0.078 0.922 8 C 0.447 3.553 9 O -0.576 6.576 10 N -0.558 5.558 11 C -0.301 4.301 12 H 0.103 0.897 13 C 0.024 3.976 14 N -0.902 5.902 15 Si 0.932 3.068 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.273 1.273 19 O -0.337 6.337 20 H 0.061 0.939 21 H 0.064 0.936 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.393 0.607 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.868 8.379 -7.292 12.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.050 3.950 3 C -0.219 4.219 4 C -0.182 4.182 5 C -0.180 4.180 6 C 0.008 3.992 7 H 0.096 0.904 8 C 0.232 3.768 9 O -0.460 6.460 10 N -0.195 5.195 11 C -0.430 4.430 12 H 0.121 0.879 13 C -0.178 4.178 14 N -0.543 5.543 15 Si 0.759 3.241 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.198 1.198 19 O -0.255 6.255 20 H 0.080 0.920 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.226 0.774 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.312 8.098 -6.526 12.166 hybrid contribution 0.822 -0.517 -0.134 0.980 sum -5.491 7.581 -6.660 11.488 Atomic orbital electron populations 1.21861 0.93287 1.02753 1.01849 1.22133 0.94830 0.92019 0.86064 1.22257 1.01601 0.95994 1.02056 1.23031 1.00076 0.97509 0.97589 1.23079 1.00708 0.99106 0.95120 1.22874 0.88741 0.94057 0.93506 0.90435 1.19481 0.84081 0.85627 0.87570 1.90537 1.49056 1.70549 1.35851 1.41746 1.18224 1.29071 1.30479 1.19675 1.04983 1.07210 1.11116 0.87895 1.25261 0.95619 0.99315 0.97612 1.69602 1.11591 1.41422 1.31665 0.85898 0.77532 0.80587 0.80096 1.19862 1.20932 1.19839 1.89044 1.38782 1.66186 1.31506 0.92019 0.91736 0.91818 0.92283 0.91933 0.91962 0.90684 0.90522 0.89759 0.90094 0.77386 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.68 37.16 0.32 -1.45 16 2 C 0.09 1.30 1.19 -90.05 -0.11 1.19 16 3 C -0.16 -1.96 8.61 37.16 0.32 -1.64 16 4 C -0.14 -1.87 6.27 -25.21 -0.16 -2.03 16 5 C -0.14 -2.29 6.58 -24.72 -0.16 -2.45 16 6 C 0.07 1.37 3.71 -26.83 -0.10 1.27 16 7 H 0.08 1.38 8.13 -51.93 -0.42 0.96 16 8 C 0.45 11.33 7.15 -10.98 -0.08 11.26 16 9 O -0.58 -17.07 16.14 -13.49 -0.22 -17.28 16 10 N -0.56 -14.53 5.29 -10.96 -0.06 -14.59 16 11 C -0.30 -8.54 9.68 -14.94 -0.14 -8.68 16 12 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 13 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 14 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 15 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 O -0.34 -6.75 10.14 -54.27 -0.55 -7.30 16 20 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 24 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.82 7.70 -51.93 -0.40 0.42 16 27 H 0.08 0.88 7.70 -51.93 -0.40 0.48 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.08 1.42 8.05 -51.93 -0.42 1.00 16 30 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 31 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 264.78 15.07 3.99 3.99 Total: -1.00 -32.33 264.78 -5.77 -38.10 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -4.43 Total: 6.74 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -0.20 Total: -2.00 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.67 Total: -38.42 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.77 Total: -24.59 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.33 -5.77 -38.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306928423.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.574 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds