Wall clock time and date at job start Mon Mar 30 2020 02:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.98840 * 2 1 4 4 C 1.54094 * 109.87999 * 238.91911 * 2 1 3 5 5 C 1.54812 * 104.18887 * 238.54363 * 4 2 1 6 6 C 1.54994 * 102.08998 * 339.11621 * 5 4 2 7 7 H 1.08998 * 110.62386 * 278.52588 * 6 5 4 8 8 C 1.50706 * 110.61841 * 155.52311 * 6 5 4 9 9 O 1.21285 * 120.00075 * 249.47979 * 8 6 5 10 10 N 1.34778 * 119.99775 * 69.47706 * 8 6 5 11 11 C 1.37091 * 119.99772 * 180.02562 * 10 8 6 12 12 H 1.08000 * 120.00433 * 0.02562 * 11 10 8 13 13 C 1.38951 * 119.99595 * 180.02562 * 11 10 8 14 14 N 1.31411 * 120.00314 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 119.99855 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47113 * 59.99605 * 15 13 11 17 17 H 1.48501 * 109.47265 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46984 * 300.00022 * 15 13 11 19 19 O 1.43740 * 109.88213 * 121.08049 * 2 1 3 20 20 H 1.09003 * 109.47065 * 300.36718 * 1 2 3 21 21 H 1.08994 * 109.47207 * 60.37015 * 1 2 3 22 22 H 1.08999 * 109.46879 * 180.37013 * 1 2 3 23 23 H 1.08999 * 109.47529 * 179.63336 * 3 2 1 24 24 H 1.09008 * 109.47356 * 299.63303 * 3 2 1 25 25 H 1.09002 * 109.47014 * 59.63044 * 3 2 1 26 26 H 1.09001 * 110.49005 * 119.86551 * 4 2 1 27 27 H 1.09003 * 110.60037 * 357.27570 * 4 2 1 28 28 H 1.09004 * 110.90657 * 220.92264 * 5 4 2 29 29 H 1.08995 * 110.91171 * 97.31446 * 5 4 2 30 30 H 0.96999 * 119.99540 * 0.02562 * 10 8 6 31 31 H 0.96996 * 119.99914 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0530 1.4378 0.0000 4 6 2.0540 -0.7481 -1.2411 5 6 2.9196 -1.8913 -0.6576 6 6 3.2380 -1.3640 0.7646 7 1 4.0685 -0.6587 0.7356 8 6 3.5430 -2.5069 1.6984 9 8 2.7655 -2.7893 2.5855 10 7 4.6797 -3.2153 1.5478 11 6 4.9569 -4.2552 2.3969 12 1 4.2642 -4.5072 3.1863 13 6 6.1290 -4.9851 2.2419 14 7 6.9716 -4.6789 1.2811 15 14 6.5071 -6.4018 3.3993 16 1 5.4331 -7.4224 3.2999 17 1 7.8072 -7.0139 3.0245 18 1 6.5813 -5.8957 4.7934 19 8 2.0189 -0.6978 1.1577 20 1 -0.3633 0.5195 0.8867 21 1 -0.3633 0.5080 -0.8932 22 1 -0.3633 -1.0276 0.0066 23 1 3.1429 1.4281 0.0066 24 1 1.6997 1.9530 -0.8933 25 1 1.6889 1.9569 0.8867 26 1 2.6619 -0.0857 -1.8574 27 1 1.2260 -1.1547 -1.8217 28 1 3.8333 -2.0222 -1.2375 29 1 2.3542 -2.8219 -0.6099 30 1 5.3016 -2.9891 0.8386 31 1 7.7897 -5.1887 1.1727 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306928423.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:03 Heat of formation + Delta-G solvation = -118.063409 kcal Electronic energy + Delta-G solvation = -14528.918679 eV Core-core repulsion = 12001.934383 eV Total energy + Delta-G solvation = -2526.984296 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.21953 -39.46858 -36.05465 -34.02066 -33.56629 -32.60718 -28.44199 -28.16012 -26.18534 -23.29243 -21.23678 -20.91400 -20.00776 -18.11893 -17.23837 -16.78891 -16.11456 -15.90545 -15.41261 -15.24173 -14.67656 -14.28426 -14.15723 -13.56284 -13.18452 -12.99895 -12.98061 -12.72231 -12.61463 -12.48670 -12.32673 -12.12699 -11.64877 -11.56177 -11.52488 -10.75317 -10.25235 -10.08756 -8.51299 -6.01422 1.37544 1.40731 1.51949 1.92124 2.22773 2.59599 3.13091 3.34084 3.62245 3.90543 3.91492 4.09530 4.15689 4.25910 4.48131 4.58006 4.74833 4.78209 4.89676 4.92800 4.99240 5.06142 5.15821 5.29278 5.36327 5.42910 5.88040 6.10196 6.53957 7.05748 7.45686 8.01848 8.65687 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.065532 B = 0.007008 C = 0.006712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.171497 B = 3994.726521 C = 4170.357373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.073 3.927 3 C -0.157 4.157 4 C -0.132 4.132 5 C -0.139 4.139 6 C 0.075 3.925 7 H 0.099 0.901 8 C 0.438 3.562 9 O -0.630 6.630 10 N -0.558 5.558 11 C -0.342 4.342 12 H 0.077 0.923 13 C -0.007 4.007 14 N -0.915 5.915 15 Si 0.995 3.005 16 H -0.271 1.271 17 H -0.266 1.266 18 H -0.272 1.272 19 O -0.377 6.377 20 H 0.054 0.946 21 H 0.101 0.899 22 H 0.047 0.953 23 H 0.056 0.944 24 H 0.095 0.905 25 H 0.054 0.946 26 H 0.106 0.894 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.399 0.601 31 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.428 9.086 -8.974 13.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.034 3.966 3 C -0.215 4.215 4 C -0.170 4.170 5 C -0.177 4.177 6 C 0.014 3.986 7 H 0.117 0.883 8 C 0.225 3.775 9 O -0.517 6.517 10 N -0.196 5.196 11 C -0.472 4.472 12 H 0.095 0.905 13 C -0.207 4.207 14 N -0.555 5.555 15 Si 0.818 3.182 16 H -0.197 1.197 17 H -0.190 1.190 18 H -0.197 1.197 19 O -0.296 6.296 20 H 0.073 0.927 21 H 0.120 0.880 22 H 0.066 0.934 23 H 0.076 0.924 24 H 0.114 0.886 25 H 0.073 0.927 26 H 0.124 0.876 27 H 0.113 0.887 28 H 0.122 0.878 29 H 0.077 0.923 30 H 0.234 0.766 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.854 8.825 -8.250 13.424 hybrid contribution 0.668 -0.711 0.381 1.047 sum -5.186 8.114 -7.869 12.436 Atomic orbital electron populations 1.21912 0.92176 1.02208 1.03367 1.22594 0.95877 0.93056 0.85038 1.22242 1.01469 0.94376 1.03383 1.23051 1.00424 0.96372 0.97112 1.23073 1.02035 0.99365 0.93250 1.22774 0.89811 0.92398 0.93603 0.88322 1.20563 0.82935 0.86442 0.87578 1.90485 1.50547 1.72363 1.38333 1.41760 1.18685 1.28824 1.30282 1.19654 1.05902 1.09440 1.12156 0.90497 1.26065 0.94661 1.01125 0.98893 1.69652 1.11733 1.42008 1.32096 0.84963 0.77938 0.77331 0.77937 1.19654 1.18972 1.19730 1.89014 1.38875 1.66979 1.34771 0.92704 0.88047 0.93370 0.92443 0.88588 0.92708 0.87553 0.88713 0.87805 0.92341 0.76645 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.68 71.98 0.62 -2.64 16 2 C 0.07 1.98 1.19 -10.42 -0.01 1.97 16 3 C -0.16 -3.36 8.61 71.98 0.62 -2.74 16 4 C -0.13 -3.00 6.27 31.58 0.20 -2.80 16 5 C -0.14 -4.31 6.58 31.89 0.21 -4.10 16 6 C 0.08 2.95 3.71 30.53 0.11 3.07 16 7 H 0.10 3.42 8.13 -2.39 -0.02 3.40 16 8 C 0.44 22.93 7.15 87.66 0.63 23.56 16 9 O -0.63 -39.21 16.14 15.16 0.24 -38.97 16 10 N -0.56 -29.87 5.29 -306.99 -1.62 -31.50 16 11 C -0.34 -20.04 9.68 84.04 0.81 -19.22 16 12 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 13 C -0.01 -0.37 5.50 84.93 0.47 0.10 16 14 N -0.91 -49.17 13.05 21.66 0.28 -48.89 16 15 Si 1.00 43.14 29.55 68.60 2.03 45.17 16 16 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 19 O -0.38 -15.15 10.14 -130.78 -1.33 -16.48 16 20 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 21 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 24 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.11 1.79 7.70 -2.39 -0.02 1.77 16 27 H 0.09 1.83 7.70 -2.39 -0.02 1.81 16 28 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 29 H 0.06 2.05 8.05 -2.39 -0.02 2.03 16 30 H 0.40 19.84 7.90 -92.71 -0.73 19.11 16 31 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -72.13 264.78 3.65 -68.48 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.39 Total: 24.99 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 3.66 Total: -2.81 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -1.34 Total: -80.39 kcal Atomic # 8 Polarization: -54.36 SS G_CDS: -1.08 Total: -55.44 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -72.13 3.65 -68.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306928423.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.585 kcal (2) G-P(sol) polarization free energy of solvation -72.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds