Wall clock time and date at job start Mon Mar 30 2020 02:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 110.56315 * 2 1 4 4 C 1.54483 * 110.50910 * 122.67466 * 2 1 3 5 5 O 1.44428 * 104.89902 * 142.57016 * 4 2 1 6 6 C 1.44528 * 105.22541 * 319.63499 * 5 4 2 7 7 C 1.54484 * 104.87482 * 40.35897 * 6 5 4 8 8 H 1.08996 * 110.50996 * 94.73811 * 7 6 5 9 9 N 1.46503 * 110.62477 * 217.39274 * 7 6 5 10 10 C 1.34769 * 120.00109 * 269.70738 * 9 7 6 11 11 O 1.21694 * 120.00091 * 0.02562 * 10 9 7 12 12 C 1.46379 * 120.00308 * 180.02562 * 10 9 7 13 13 H 1.08000 * 119.99563 * 0.02562 * 12 10 9 14 14 C 1.40041 * 120.00177 * 180.02562 * 12 10 9 15 15 N 1.30676 * 119.99968 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 120.00103 * 180.02562 * 14 12 10 17 17 H 1.48491 * 109.47193 * 59.99913 * 16 14 12 18 18 H 1.48502 * 109.47148 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46826 * 300.00108 * 16 14 12 20 20 H 1.09000 * 109.47398 * 298.78086 * 1 2 3 21 21 H 1.09004 * 109.47288 * 58.77859 * 1 2 3 22 22 H 1.09007 * 109.47563 * 178.77885 * 1 2 3 23 23 H 1.09013 * 109.46793 * 181.22647 * 3 2 1 24 24 H 1.09001 * 109.47103 * 301.21746 * 3 2 1 25 25 H 1.08997 * 109.47778 * 61.22591 * 3 2 1 26 26 H 1.09002 * 110.37322 * 261.45530 * 4 2 1 27 27 H 1.08999 * 110.37312 * 23.68207 * 4 2 1 28 28 H 1.08997 * 110.27322 * 281.53912 * 6 5 4 29 29 H 1.08996 * 110.48948 * 159.29262 * 6 5 4 30 30 H 0.97004 * 119.99798 * 89.71242 * 9 7 6 31 31 H 0.96997 * 119.99757 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0674 1.4325 0.0000 4 6 2.0712 -0.7811 1.2179 5 8 3.2394 -1.4733 0.7259 6 6 2.8757 -1.9423 -0.5919 7 6 2.0714 -0.7814 -1.2180 8 1 2.7219 -0.1472 -1.8201 9 7 0.9661 -1.2980 -2.0291 10 6 1.1531 -1.5518 -3.3394 11 8 2.2402 -1.3523 -3.8488 12 6 0.0486 -2.0673 -4.1500 13 1 -0.9162 -2.2439 -3.6980 14 6 0.2431 -2.3315 -5.5114 15 7 1.4107 -2.1183 -6.0581 16 14 -1.1666 -2.9887 -6.5460 17 1 -2.2899 -2.0178 -6.5259 18 1 -0.7054 -3.1841 -7.9440 19 1 -1.6248 -4.2875 -5.9903 20 1 -0.3634 0.4948 0.9007 21 1 -0.3634 0.5327 -0.8788 22 1 -0.3634 -1.0275 -0.0219 23 1 3.1571 1.4117 -0.0220 24 1 1.6963 1.9598 -0.8789 25 1 1.7319 1.9465 0.9007 26 1 2.3464 -0.0937 2.0179 27 1 1.3277 -1.4955 1.5715 28 1 2.2563 -2.8360 -0.5171 29 1 3.7678 -2.1481 -1.1833 30 1 0.0997 -1.4572 -1.6230 31 1 1.5455 -2.3017 -7.0010 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307334746.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:28 Heat of formation + Delta-G solvation = -114.340616 kcal Electronic energy + Delta-G solvation = -14773.940697 eV Core-core repulsion = 12247.117833 eV Total energy + Delta-G solvation = -2526.822863 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.23349 -38.88692 -35.97205 -34.69512 -33.71772 -30.08152 -28.43871 -27.80381 -26.93889 -23.81943 -21.73110 -20.25096 -19.22829 -17.60853 -17.12988 -16.88329 -16.19455 -15.92621 -15.83119 -14.76707 -14.48341 -14.23157 -14.03626 -13.60739 -13.37692 -12.98637 -12.88370 -12.71870 -12.60579 -12.49607 -12.07673 -11.80925 -11.73333 -11.53896 -10.92992 -10.76557 -9.88097 -9.47767 -8.29617 -6.86661 1.39942 1.43225 1.55021 2.23712 2.45870 2.81551 3.26613 3.44506 3.60644 3.82882 3.93056 4.14361 4.22325 4.36798 4.67191 4.71527 4.76633 4.81662 4.87180 4.97399 4.99880 5.11088 5.30468 5.30976 5.34690 5.72767 5.87001 6.22531 6.27873 6.86065 7.53158 8.48598 8.66740 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.050479 B = 0.008044 C = 0.007683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.554992 B = 3480.050198 C = 3643.411834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.103 4.103 3 C -0.130 4.130 4 C 0.053 3.947 5 O -0.390 6.390 6 C 0.041 3.959 7 C 0.127 3.873 8 H 0.054 0.946 9 N -0.741 5.741 10 C 0.537 3.463 11 O -0.632 6.632 12 C -0.573 4.573 13 H 0.088 0.912 14 C 0.028 3.972 15 N -0.822 5.822 16 Si 0.997 3.003 17 H -0.254 1.254 18 H -0.276 1.276 19 H -0.254 1.254 20 H 0.090 0.910 21 H 0.052 0.948 22 H 0.061 0.939 23 H 0.050 0.950 24 H 0.045 0.955 25 H 0.089 0.911 26 H 0.118 0.882 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.398 0.602 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.209 3.008 12.292 13.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.104 4.104 3 C -0.187 4.187 4 C -0.023 4.023 5 O -0.308 6.308 6 C -0.037 4.037 7 C 0.020 3.980 8 H 0.072 0.928 9 N -0.399 5.399 10 C 0.342 3.658 11 O -0.519 6.519 12 C -0.609 4.609 13 H 0.106 0.894 14 C -0.187 4.187 15 N -0.451 5.451 16 Si 0.817 3.183 17 H -0.178 1.178 18 H -0.200 1.200 19 H -0.178 1.178 20 H 0.108 0.892 21 H 0.071 0.929 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.108 0.892 26 H 0.136 0.864 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.236 0.764 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.103 3.130 11.912 12.981 hybrid contribution -0.563 -0.381 -0.828 1.071 sum -4.666 2.749 11.083 12.335 Atomic orbital electron populations 1.21751 0.91964 1.02318 1.03124 1.22176 0.97940 0.96760 0.93493 1.21785 1.00623 0.93572 1.02740 1.23755 0.87543 0.95241 0.95809 1.89080 1.36918 1.74258 1.30557 1.23755 0.99329 0.97130 0.83528 1.21967 0.89633 0.94323 0.92121 0.92770 1.46007 1.13451 1.71180 1.09235 1.18654 0.88782 0.77527 0.80879 1.90559 1.29293 1.59059 1.72977 1.21391 0.97903 1.46721 0.94906 0.89359 1.26978 0.99125 0.93119 0.99482 1.70187 1.25303 1.36753 1.12852 0.85077 0.77303 0.79609 0.76350 1.17752 1.20038 1.17814 0.89151 0.92928 0.92025 0.93096 0.93582 0.89185 0.86436 0.90730 0.92102 0.91150 0.76436 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 7.17 71.98 0.52 -2.65 16 2 C -0.10 -2.87 1.06 -51.17 -0.05 -2.92 16 3 C -0.13 -3.27 8.29 71.98 0.60 -2.67 16 4 C 0.05 1.31 6.73 72.49 0.49 1.79 16 5 O -0.39 -13.02 11.66 -148.98 -1.74 -14.76 16 6 C 0.04 1.58 7.36 72.49 0.53 2.11 16 7 C 0.13 5.03 3.10 46.01 0.14 5.17 16 8 H 0.05 2.56 7.14 -2.39 -0.02 2.54 16 9 N -0.74 -32.94 4.62 -442.00 -2.04 -34.99 16 10 C 0.54 31.06 7.75 86.36 0.67 31.72 16 11 O -0.63 -42.51 14.67 -4.33 -0.06 -42.57 16 12 C -0.57 -32.21 9.54 24.83 0.24 -31.98 16 13 H 0.09 4.40 7.85 -2.91 -0.02 4.38 16 14 C 0.03 1.56 5.50 85.30 0.47 2.03 16 15 N -0.82 -50.48 11.83 21.83 0.26 -50.23 16 16 Si 1.00 40.69 29.56 68.60 2.03 42.72 16 17 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 18 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 19 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 20 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 21 H 0.05 1.42 7.97 -2.39 -0.02 1.40 16 22 H 0.06 1.43 6.75 -2.38 -0.02 1.41 16 23 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 24 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.12 2.23 7.87 -2.39 -0.02 2.21 16 27 H 0.07 1.62 7.87 -2.39 -0.02 1.60 16 28 H 0.06 2.29 8.06 -2.39 -0.02 2.27 16 29 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 30 H 0.40 15.11 5.88 -92.71 -0.55 14.57 16 31 H 0.27 15.31 8.29 -92.71 -0.77 14.54 16 Total: -1.00 -74.47 258.55 2.62 -71.85 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 0.58 Total: 25.37 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 3.60 Total: 2.61 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -1.79 Total: -85.21 kcal Atomic # 8 Polarization: -55.53 SS G_CDS: -1.80 Total: -57.33 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -74.47 2.62 -71.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307334746.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.489 kcal (2) G-P(sol) polarization free energy of solvation -74.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds