Wall clock time and date at job start Mon Mar 30 2020 02:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 110.56837 * 2 1 4 4 C 1.54487 * 110.51050 * 122.68033 * 2 1 3 5 5 O 1.44421 * 104.80329 * 94.66503 * 4 2 1 6 6 C 1.44419 * 105.27770 * 40.51345 * 5 4 2 7 7 C 1.54486 * 104.80360 * 319.48706 * 6 5 4 8 8 H 1.09004 * 110.51003 * 265.33533 * 7 6 5 9 9 N 1.46497 * 110.51163 * 142.62250 * 7 6 5 10 10 C 1.34777 * 119.99996 * 90.35944 * 9 7 6 11 11 O 1.21696 * 119.99834 * 359.97438 * 10 9 7 12 12 C 1.46371 * 120.00482 * 179.97438 * 10 9 7 13 13 H 1.08005 * 119.99111 * 359.97438 * 12 10 9 14 14 C 1.40042 * 120.00631 * 180.02562 * 12 10 9 15 15 N 1.30671 * 119.99702 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 120.00386 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47121 * 59.99431 * 16 14 12 18 18 H 1.48494 * 109.47224 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46919 * 299.99737 * 16 14 12 20 20 H 1.09001 * 109.47179 * 298.77922 * 1 2 3 21 21 H 1.08999 * 109.46674 * 58.77500 * 1 2 3 22 22 H 1.08998 * 109.47508 * 178.77543 * 1 2 3 23 23 H 1.08999 * 109.47343 * 181.22511 * 3 2 1 24 24 H 1.09004 * 109.46860 * 301.22448 * 3 2 1 25 25 H 1.08994 * 109.47089 * 61.22295 * 3 2 1 26 26 H 1.08996 * 110.36985 * 213.49832 * 4 2 1 27 27 H 1.09001 * 110.36654 * 335.83146 * 4 2 1 28 28 H 1.09002 * 110.37652 * 78.31690 * 6 5 4 29 29 H 1.09005 * 110.37045 * 200.65769 * 6 5 4 30 30 H 0.96994 * 120.00206 * 270.36018 * 9 7 6 31 31 H 0.97006 * 120.00422 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0675 1.4325 0.0000 4 6 2.0713 -0.7813 1.2179 5 8 2.3069 -2.1177 0.7239 6 6 2.8757 -1.9423 -0.5920 7 6 2.0714 -0.7814 -1.2181 8 1 1.2490 -1.1677 -1.8203 9 7 2.9458 0.0710 -2.0274 10 6 3.1188 -0.1925 -3.3378 11 8 2.5490 -1.1387 -3.8485 12 6 3.9920 0.6595 -4.1466 13 1 4.4972 1.4996 -3.6933 14 6 4.1713 0.3861 -5.5083 15 7 3.5596 -0.6300 -6.0568 16 14 5.2862 1.4729 -6.5404 17 1 6.6626 1.4406 -5.9835 18 1 5.3068 0.9746 -7.9390 19 1 4.7762 2.8674 -6.5187 20 1 -0.3633 0.4948 0.9007 21 1 -0.3633 0.5328 -0.8788 22 1 -0.3634 -1.0274 -0.0220 23 1 3.1571 1.4117 -0.0220 24 1 1.6963 1.9598 -0.8788 25 1 1.7320 1.9464 0.9007 26 1 3.0023 -0.3373 1.5702 27 1 1.3310 -0.7974 2.0178 28 1 3.9301 -1.6763 -0.5173 29 1 2.7534 -2.8504 -1.1824 30 1 3.4002 0.8250 -1.6202 31 1 3.6840 -0.8197 -6.9999 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307334748.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:30 Heat of formation + Delta-G solvation = -89.480455 kcal Electronic energy + Delta-G solvation = -14773.815423 eV Core-core repulsion = 12248.070577 eV Total energy + Delta-G solvation = -2525.744846 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.80638 -36.87918 -34.50270 -32.68598 -31.87364 -28.39698 -27.18879 -26.01203 -25.65825 -22.21337 -19.89391 -18.73521 -17.37211 -15.76412 -15.63262 -15.20694 -14.83044 -14.45762 -14.03296 -13.08642 -13.03773 -12.76404 -12.38842 -12.05901 -11.97490 -11.60471 -11.35800 -11.11994 -10.95365 -10.56719 -10.51069 -10.47302 -10.24331 -10.14764 -9.42948 -8.86821 -7.65744 -7.54344 -6.20866 -4.67150 3.14046 3.19163 3.20873 4.06533 4.26722 4.53941 4.74854 4.89051 4.98342 5.17411 5.47913 5.53431 5.67382 5.76063 5.76378 5.85608 5.96053 6.05014 6.10688 6.15502 6.35832 6.39715 6.45036 6.60170 7.09102 7.40676 7.89190 8.07036 8.29755 8.99837 9.49326 10.57347 10.75628 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.050486 B = 0.008045 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.472281 B = 3479.698877 C = 3642.447240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.110 4.110 3 C -0.136 4.136 4 C 0.055 3.945 5 O -0.381 6.381 6 C 0.033 3.967 7 C 0.135 3.865 8 H 0.092 0.908 9 N -0.758 5.758 10 C 0.553 3.447 11 O -0.580 6.580 12 C -0.546 4.546 13 H 0.066 0.934 14 C 0.088 3.912 15 N -0.767 5.767 16 Si 0.908 3.092 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.268 1.268 20 H 0.053 0.947 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.383 0.617 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.825 3.784 10.735 11.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.111 4.111 3 C -0.194 4.194 4 C -0.023 4.023 5 O -0.299 6.299 6 C -0.045 4.045 7 C 0.027 3.973 8 H 0.110 0.890 9 N -0.415 5.415 10 C 0.357 3.643 11 O -0.463 6.463 12 C -0.583 4.583 13 H 0.085 0.915 14 C -0.132 4.132 15 N -0.395 5.395 16 Si 0.732 3.268 17 H -0.193 1.193 18 H -0.205 1.205 19 H -0.193 1.193 20 H 0.072 0.928 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.218 0.782 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.328 2.762 10.280 10.896 hybrid contribution 0.876 1.082 -0.437 1.459 sum -1.452 3.844 9.843 10.667 Atomic orbital electron populations 1.21779 0.93408 1.02105 1.01604 1.22165 0.96806 0.96394 0.95768 1.21756 1.00836 0.94747 1.02030 1.23475 0.99499 0.83383 0.95897 1.89066 1.83392 1.25554 1.31930 1.24030 0.97262 1.00511 0.82690 1.21867 0.94109 0.90187 0.91094 0.89004 1.46385 1.51351 1.33087 1.10716 1.18265 0.81886 0.85108 0.79009 1.90602 1.52038 1.32399 1.71217 1.20832 1.29420 1.14095 0.93917 0.91534 1.25700 0.94845 0.94614 0.98065 1.70007 1.34047 1.23445 1.12047 0.86437 0.80877 0.80682 0.78767 1.19297 1.20536 1.19302 0.92801 0.92179 0.92215 0.92221 0.91346 0.92777 0.92583 0.89594 0.92246 0.88939 0.78202 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 8.29 37.16 0.31 -1.46 16 2 C -0.11 -1.64 1.05 -152.94 -0.16 -1.80 16 3 C -0.14 -1.81 7.18 37.16 0.27 -1.54 16 4 C 0.05 0.76 6.74 37.94 0.26 1.02 16 5 O -0.38 -6.60 11.65 -35.23 -0.41 -7.01 16 6 C 0.03 0.63 7.35 37.94 0.28 0.90 16 7 C 0.14 2.63 3.10 -66.36 -0.21 2.42 16 8 H 0.09 2.04 7.15 -51.93 -0.37 1.67 16 9 N -0.76 -16.61 4.62 -53.69 -0.25 -16.85 16 10 C 0.55 15.49 7.75 -12.99 -0.10 15.39 16 11 O -0.58 -18.54 14.67 5.19 0.08 -18.47 16 12 C -0.55 -15.24 9.54 -35.64 -0.34 -15.58 16 13 H 0.07 1.69 7.85 -52.48 -0.41 1.28 16 14 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 15 N -0.77 -22.89 11.83 55.55 0.66 -22.23 16 16 Si 0.91 20.00 29.56 -169.99 -5.02 14.98 16 17 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.06 0.78 6.75 -51.93 -0.35 0.43 16 24 H 0.07 0.99 7.98 -51.93 -0.41 0.57 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.72 7.87 -51.93 -0.41 0.32 16 27 H 0.09 1.02 7.87 -51.93 -0.41 0.61 16 28 H 0.06 1.11 8.06 -51.93 -0.42 0.69 16 29 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 30 H 0.38 7.41 5.88 -40.82 -0.24 7.17 16 31 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 LS Contribution 258.54 15.07 3.90 3.90 Total: -1.00 -32.93 258.54 -5.12 -38.05 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -4.27 Total: 5.94 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 0.21 Total: 1.69 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.41 Total: -39.08 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.33 Total: -25.48 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -32.93 -5.12 -38.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307334748.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.430 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds