Wall clock time and date at job start Mon Mar 30 2020 02:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 110.56837 * 2 1 4 4 C 1.54487 * 110.51050 * 122.68033 * 2 1 3 5 5 O 1.44421 * 104.80329 * 94.66503 * 4 2 1 6 6 C 1.44419 * 105.27770 * 40.51345 * 5 4 2 7 7 C 1.54486 * 104.80360 * 319.48706 * 6 5 4 8 8 H 1.09004 * 110.51003 * 265.33533 * 7 6 5 9 9 N 1.46497 * 110.51163 * 142.62250 * 7 6 5 10 10 C 1.34777 * 119.99996 * 90.35944 * 9 7 6 11 11 O 1.21696 * 119.99834 * 359.97438 * 10 9 7 12 12 C 1.46371 * 120.00482 * 179.97438 * 10 9 7 13 13 H 1.08005 * 119.99111 * 359.97438 * 12 10 9 14 14 C 1.40042 * 120.00631 * 180.02562 * 12 10 9 15 15 N 1.30671 * 119.99702 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 120.00386 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47121 * 59.99431 * 16 14 12 18 18 H 1.48494 * 109.47224 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46919 * 299.99737 * 16 14 12 20 20 H 1.09001 * 109.47179 * 298.77922 * 1 2 3 21 21 H 1.08999 * 109.46674 * 58.77500 * 1 2 3 22 22 H 1.08998 * 109.47508 * 178.77543 * 1 2 3 23 23 H 1.08999 * 109.47343 * 181.22511 * 3 2 1 24 24 H 1.09004 * 109.46860 * 301.22448 * 3 2 1 25 25 H 1.08994 * 109.47089 * 61.22295 * 3 2 1 26 26 H 1.08996 * 110.36985 * 213.49832 * 4 2 1 27 27 H 1.09001 * 110.36654 * 335.83146 * 4 2 1 28 28 H 1.09002 * 110.37652 * 78.31690 * 6 5 4 29 29 H 1.09005 * 110.37045 * 200.65769 * 6 5 4 30 30 H 0.96994 * 120.00206 * 270.36018 * 9 7 6 31 31 H 0.97006 * 120.00422 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0675 1.4325 0.0000 4 6 2.0713 -0.7813 1.2179 5 8 2.3069 -2.1177 0.7239 6 6 2.8757 -1.9423 -0.5920 7 6 2.0714 -0.7814 -1.2181 8 1 1.2490 -1.1677 -1.8203 9 7 2.9458 0.0710 -2.0274 10 6 3.1188 -0.1925 -3.3378 11 8 2.5490 -1.1387 -3.8485 12 6 3.9920 0.6595 -4.1466 13 1 4.4972 1.4996 -3.6933 14 6 4.1713 0.3861 -5.5083 15 7 3.5596 -0.6300 -6.0568 16 14 5.2862 1.4729 -6.5404 17 1 6.6626 1.4406 -5.9835 18 1 5.3068 0.9746 -7.9390 19 1 4.7762 2.8674 -6.5187 20 1 -0.3633 0.4948 0.9007 21 1 -0.3633 0.5328 -0.8788 22 1 -0.3634 -1.0274 -0.0220 23 1 3.1571 1.4117 -0.0220 24 1 1.6963 1.9598 -0.8788 25 1 1.7320 1.9464 0.9007 26 1 3.0023 -0.3373 1.5702 27 1 1.3310 -0.7974 2.0178 28 1 3.9301 -1.6763 -0.5173 29 1 2.7534 -2.8504 -1.1824 30 1 3.4002 0.8250 -1.6202 31 1 3.6840 -0.8197 -6.9999 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307334748.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:30 Heat of formation + Delta-G solvation = -114.296238 kcal Electronic energy + Delta-G solvation = -14774.891516 eV Core-core repulsion = 12248.070577 eV Total energy + Delta-G solvation = -2526.820939 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.24117 -38.88796 -35.97383 -34.69564 -33.71876 -30.07936 -28.43911 -27.80313 -26.93989 -23.81717 -21.73226 -20.24998 -19.22810 -17.60921 -17.13026 -16.88556 -16.19989 -15.92731 -15.83238 -14.76592 -14.48290 -14.23192 -14.03542 -13.60745 -13.37598 -12.98642 -12.88191 -12.71851 -12.60552 -12.49532 -12.07676 -11.80897 -11.73308 -11.53896 -10.93020 -10.76542 -9.88040 -9.47601 -8.29606 -6.86662 1.39937 1.43217 1.55024 2.23717 2.45884 2.81769 3.26721 3.44627 3.60721 3.82943 3.93226 4.14446 4.22397 4.36848 4.67276 4.71479 4.76586 4.81608 4.87206 4.97424 4.99894 5.11164 5.30491 5.30920 5.34766 5.73276 5.87059 6.22594 6.27963 6.86054 7.53215 8.48628 8.66756 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.050486 B = 0.008045 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.472281 B = 3479.698877 C = 3642.447240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.103 4.103 3 C -0.134 4.134 4 C 0.053 3.947 5 O -0.390 6.390 6 C 0.041 3.959 7 C 0.127 3.873 8 H 0.054 0.946 9 N -0.742 5.742 10 C 0.537 3.463 11 O -0.632 6.632 12 C -0.573 4.573 13 H 0.088 0.912 14 C 0.028 3.972 15 N -0.822 5.822 16 Si 0.997 3.003 17 H -0.254 1.254 18 H -0.276 1.276 19 H -0.254 1.254 20 H 0.089 0.911 21 H 0.045 0.955 22 H 0.050 0.950 23 H 0.061 0.939 24 H 0.051 0.949 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.118 0.882 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.398 0.602 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.985 5.920 12.303 13.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.104 4.104 3 C -0.192 4.192 4 C -0.023 4.023 5 O -0.308 6.308 6 C -0.037 4.037 7 C 0.019 3.981 8 H 0.072 0.928 9 N -0.399 5.399 10 C 0.342 3.658 11 O -0.519 6.519 12 C -0.609 4.609 13 H 0.106 0.894 14 C -0.187 4.187 15 N -0.451 5.451 16 Si 0.817 3.183 17 H -0.178 1.178 18 H -0.200 1.200 19 H -0.178 1.178 20 H 0.108 0.892 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.108 0.892 26 H 0.093 0.907 27 H 0.136 0.864 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.236 0.764 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.489 4.929 11.921 12.985 hybrid contribution 0.555 0.395 -0.829 1.073 sum -0.934 5.323 11.091 12.338 Atomic orbital electron populations 1.21783 0.92315 1.01882 1.02737 1.22180 0.97690 0.97011 0.93509 1.21749 1.00877 0.93409 1.03116 1.23762 1.01337 0.81434 0.95801 1.89058 1.83277 1.27831 1.30651 1.23749 0.97246 0.99192 0.83547 1.21977 0.92838 0.91107 0.92137 0.92760 1.46007 1.51148 1.33460 1.09266 1.18654 0.81675 0.84639 0.80874 1.90560 1.53975 1.34459 1.72900 1.21390 1.29790 1.14832 0.94910 0.89362 1.26977 0.96259 0.96002 0.99462 1.70185 1.36171 1.25942 1.12794 0.85077 0.78477 0.78430 0.76356 1.17816 1.20037 1.17751 0.89188 0.93588 0.93093 0.92026 0.92941 0.89153 0.90721 0.86412 0.92085 0.91163 0.76438 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.29 71.98 0.60 -2.67 16 2 C -0.10 -2.87 1.05 -51.16 -0.05 -2.93 16 3 C -0.13 -3.17 7.18 71.98 0.52 -2.65 16 4 C 0.05 1.31 6.74 72.49 0.49 1.80 16 5 O -0.39 -13.02 11.65 -148.98 -1.74 -14.75 16 6 C 0.04 1.58 7.35 72.49 0.53 2.11 16 7 C 0.13 5.02 3.10 46.01 0.14 5.16 16 8 H 0.05 2.56 7.15 -2.39 -0.02 2.54 16 9 N -0.74 -32.95 4.62 -441.99 -2.04 -34.99 16 10 C 0.54 31.06 7.75 86.36 0.67 31.73 16 11 O -0.63 -42.52 14.67 -4.33 -0.06 -42.58 16 12 C -0.57 -32.22 9.54 24.83 0.24 -31.98 16 13 H 0.09 4.40 7.85 -2.91 -0.02 4.38 16 14 C 0.03 1.57 5.50 85.30 0.47 2.04 16 15 N -0.82 -50.48 11.83 21.83 0.26 -50.23 16 16 Si 1.00 40.69 29.56 68.60 2.03 42.72 16 17 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 18 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 19 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 20 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 21 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.06 1.43 6.75 -2.39 -0.02 1.41 16 24 H 0.05 1.42 7.98 -2.38 -0.02 1.40 16 25 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.07 1.62 7.87 -2.39 -0.02 1.60 16 27 H 0.12 2.23 7.87 -2.39 -0.02 2.21 16 28 H 0.06 2.30 8.06 -2.39 -0.02 2.28 16 29 H 0.07 2.95 8.14 -2.38 -0.02 2.93 16 30 H 0.40 15.12 5.88 -92.71 -0.55 14.57 16 31 H 0.27 15.31 8.29 -92.70 -0.77 14.54 16 Total: -1.00 -74.48 258.54 2.62 -71.86 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.58 Total: 25.37 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 3.60 Total: 2.60 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -1.78 Total: -85.22 kcal Atomic # 8 Polarization: -55.54 SS G_CDS: -1.80 Total: -57.34 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -74.48 2.62 -71.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307334748.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.440 kcal (2) G-P(sol) polarization free energy of solvation -74.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds