Wall clock time and date at job start Mon Mar 30 2020 02:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99981 * 2 1 4 4 C 1.52998 * 110.36734 * 299.25849 * 3 2 1 5 5 C 1.54615 * 110.32909 * 177.07178 * 3 2 1 6 6 C 1.54940 * 102.83728 * 262.95320 * 5 3 2 7 7 N 1.48115 * 103.25501 * 322.62160 * 6 5 3 8 8 C 1.34782 * 127.03237 * 219.32826 * 7 6 5 9 9 O 1.21685 * 119.99947 * 179.97438 * 8 7 6 10 10 C 1.46372 * 119.99893 * 359.95540 * 8 7 6 11 11 H 1.07997 * 120.00308 * 353.50994 * 10 8 7 12 12 C 1.40048 * 119.99989 * 173.50478 * 10 8 7 13 13 N 1.30674 * 119.99879 * 5.99515 * 12 10 8 14 14 Si 1.86799 * 120.00299 * 186.00034 * 12 10 8 15 15 H 1.48495 * 109.47358 * 94.98338 * 14 12 10 16 16 H 1.48498 * 109.47099 * 214.98650 * 14 12 10 17 17 H 1.48500 * 109.46765 * 334.98132 * 14 12 10 18 18 C 1.47480 * 105.93307 * 39.29513 * 7 6 5 19 19 H 1.08997 * 109.47466 * 300.00513 * 1 2 3 20 20 H 1.09001 * 109.47075 * 60.00830 * 1 2 3 21 21 H 1.09006 * 109.46974 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47415 * 180.73751 * 4 3 2 23 23 H 1.09005 * 109.47752 * 300.74054 * 4 3 2 24 24 H 1.09005 * 109.47469 * 60.73676 * 4 3 2 25 25 H 1.09001 * 110.73906 * 21.29088 * 5 3 2 26 26 H 1.09004 * 110.73955 * 144.61172 * 5 3 2 27 27 H 1.09003 * 110.65974 * 81.06786 * 6 5 3 28 28 H 1.09003 * 110.65751 * 204.17932 * 6 5 3 29 29 H 0.96996 * 120.00033 * 179.97438 * 13 12 10 30 30 H 1.09006 * 109.91365 * 215.19313 * 18 7 6 31 31 H 1.08993 * 109.91701 * 93.91374 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5864 2.0770 -1.2513 5 6 3.5515 1.2072 0.0741 6 6 3.8366 1.4014 1.5846 7 7 2.8369 2.4158 1.9912 8 6 3.0223 3.4410 2.8463 9 8 2.1057 4.2034 3.0900 10 6 4.3260 3.6371 3.4821 11 1 5.1074 2.9034 3.3494 12 6 4.5604 4.7762 4.2624 13 7 3.5828 5.6042 4.5198 14 14 6.2703 5.1120 4.9352 15 1 6.9932 6.0270 4.0157 16 1 6.1601 5.7423 6.2752 17 1 7.0171 3.8335 5.0495 18 6 1.5973 2.0750 1.2685 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 2.0478 3.0646 -1.2430 23 1 1.9078 1.5334 -2.1398 24 1 0.5016 2.1830 -1.2629 25 1 3.8923 0.2273 -0.2602 26 1 4.0174 1.9996 -0.5118 27 1 3.6819 0.4693 2.1281 28 1 4.8488 1.7750 1.7399 29 1 3.7449 6.3929 5.0606 30 1 1.0655 2.9859 0.9935 31 1 0.9636 1.4466 1.8941 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307473836.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:36 Heat of formation + Delta-G solvation = -79.237919 kcal Electronic energy + Delta-G solvation = -14733.270807 eV Core-core repulsion = 12207.970111 eV Total energy + Delta-G solvation = -2525.300696 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.42433 -36.96111 -34.91820 -32.51232 -31.06521 -28.95610 -27.13077 -26.59829 -24.99636 -22.26737 -19.93340 -19.02120 -16.95822 -16.09824 -15.62300 -15.00826 -14.79331 -14.24470 -14.01674 -13.59481 -13.09436 -12.47811 -12.30934 -12.12570 -11.81473 -11.53019 -11.28227 -11.08995 -10.97231 -10.90321 -10.71816 -10.34060 -10.23589 -10.05416 -9.34698 -8.86693 -7.65756 -7.24771 -6.22530 -4.65599 3.13094 3.20143 3.23977 3.91231 4.08221 4.51493 4.61556 4.92160 5.11085 5.16862 5.45185 5.53418 5.64627 5.70114 5.73511 5.80862 5.85980 6.05018 6.18274 6.19635 6.35892 6.38688 6.53733 6.63284 7.25380 7.43087 7.48732 8.09248 8.40700 9.00313 9.49268 10.55532 10.74329 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.055436 B = 0.008027 C = 0.007544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.966277 B = 3487.227244 C = 3710.559096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.377 6.377 3 C 0.096 3.904 4 C -0.167 4.167 5 C -0.120 4.120 6 C 0.115 3.885 7 N -0.643 5.643 8 C 0.575 3.425 9 O -0.578 6.578 10 C -0.539 4.539 11 H 0.071 0.929 12 C 0.087 3.913 13 N -0.769 5.769 14 Si 0.909 3.091 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.264 1.264 18 C 0.092 3.908 19 H 0.045 0.955 20 H 0.041 0.959 21 H 0.081 0.919 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.269 0.731 30 H 0.067 0.933 31 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.659 -8.186 -8.739 11.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.296 6.296 3 C 0.057 3.943 4 C -0.224 4.224 5 C -0.158 4.158 6 C -0.010 4.010 7 N -0.383 5.383 8 C 0.382 3.618 9 O -0.460 6.460 10 C -0.576 4.576 11 H 0.089 0.911 12 C -0.133 4.133 13 N -0.397 5.397 14 Si 0.734 3.266 15 H -0.197 1.197 16 H -0.204 1.204 17 H -0.188 1.188 18 C -0.033 4.033 19 H 0.064 0.936 20 H 0.060 0.940 21 H 0.099 0.901 22 H 0.090 0.910 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.119 -7.649 -8.413 11.425 hybrid contribution 0.527 0.305 0.279 0.670 sum -0.592 -7.344 -8.134 10.975 Atomic orbital electron populations 1.22745 0.81906 1.02158 1.00349 1.87935 1.19267 1.27416 1.94988 1.22450 0.94577 0.82911 0.94403 1.22319 1.01668 1.00981 0.97457 1.22764 0.92182 1.02378 0.98499 1.22161 0.94821 0.92134 0.91865 1.49021 1.09950 1.30745 1.48582 1.18061 0.89524 0.77212 0.77051 1.90606 1.44692 1.45722 1.64983 1.20869 0.97237 1.07699 1.31757 0.91072 1.25738 0.97858 0.95265 0.94448 1.70030 1.31551 1.09715 1.28427 0.86329 0.82608 0.79213 0.78476 1.19746 1.20403 1.18787 1.22221 0.90573 0.98459 0.92001 0.93617 0.94043 0.90062 0.91048 0.91994 0.92393 0.90130 0.89967 0.92978 0.90052 0.92045 0.91491 0.93216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.31 101.05 1.04 1.36 16 2 O -0.38 -5.91 10.34 -35.23 -0.36 -6.28 16 3 C 0.10 1.58 1.05 -89.25 -0.09 1.48 16 4 C -0.17 -2.32 7.99 37.16 0.30 -2.02 16 5 C -0.12 -1.90 6.36 -24.86 -0.16 -2.06 16 6 C 0.11 2.20 6.87 -2.13 -0.01 2.19 16 7 N -0.64 -15.42 3.29 -171.42 -0.56 -15.98 16 8 C 0.57 16.94 7.81 -12.99 -0.10 16.84 16 9 O -0.58 -19.30 15.38 5.20 0.08 -19.22 16 10 C -0.54 -15.43 8.99 -35.63 -0.32 -15.75 16 11 H 0.07 1.87 6.55 -52.49 -0.34 1.52 16 12 C 0.09 2.44 5.49 -17.37 -0.10 2.34 16 13 N -0.77 -23.25 11.85 55.55 0.66 -22.59 16 14 Si 0.91 20.18 29.56 -169.99 -5.03 15.16 16 15 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 17 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 18 C 0.09 1.89 5.83 -2.98 -0.02 1.88 16 19 H 0.05 0.60 6.51 -51.93 -0.34 0.26 16 20 H 0.04 0.46 6.53 -51.93 -0.34 0.12 16 21 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.74 6.68 -51.93 -0.35 0.39 16 25 H 0.08 1.11 8.08 -51.93 -0.42 0.70 16 26 H 0.08 1.24 7.86 -51.93 -0.41 0.83 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.08 1.55 6.72 -51.93 -0.35 1.20 16 29 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 30 H 0.07 1.45 7.59 -51.93 -0.39 1.06 16 31 H 0.05 1.02 6.57 -51.93 -0.34 0.68 16 LS Contribution 256.42 15.07 3.86 3.86 Total: -1.00 -34.58 256.42 -4.92 -39.50 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -4.10 Total: -0.70 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 0.54 Total: 6.26 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.09 Total: -38.57 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.28 Total: -25.50 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -34.58 -4.92 -39.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307473836.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.743 kcal (2) G-P(sol) polarization free energy of solvation -34.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds