Wall clock time and date at job start Mon Mar 30 2020 02:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99981 * 2 1 4 4 C 1.52998 * 110.36734 * 299.25849 * 3 2 1 5 5 C 1.54615 * 110.32909 * 177.07178 * 3 2 1 6 6 C 1.54940 * 102.83728 * 262.95320 * 5 3 2 7 7 N 1.48115 * 103.25501 * 322.62160 * 6 5 3 8 8 C 1.34782 * 127.03237 * 219.32826 * 7 6 5 9 9 O 1.21685 * 119.99947 * 179.97438 * 8 7 6 10 10 C 1.46372 * 119.99893 * 359.95540 * 8 7 6 11 11 H 1.07997 * 120.00308 * 353.50994 * 10 8 7 12 12 C 1.40048 * 119.99989 * 173.50478 * 10 8 7 13 13 N 1.30674 * 119.99879 * 5.99515 * 12 10 8 14 14 Si 1.86799 * 120.00299 * 186.00034 * 12 10 8 15 15 H 1.48495 * 109.47358 * 94.98338 * 14 12 10 16 16 H 1.48498 * 109.47099 * 214.98650 * 14 12 10 17 17 H 1.48500 * 109.46765 * 334.98132 * 14 12 10 18 18 C 1.47480 * 105.93307 * 39.29513 * 7 6 5 19 19 H 1.08997 * 109.47466 * 300.00513 * 1 2 3 20 20 H 1.09001 * 109.47075 * 60.00830 * 1 2 3 21 21 H 1.09006 * 109.46974 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47415 * 180.73751 * 4 3 2 23 23 H 1.09005 * 109.47752 * 300.74054 * 4 3 2 24 24 H 1.09005 * 109.47469 * 60.73676 * 4 3 2 25 25 H 1.09001 * 110.73906 * 21.29088 * 5 3 2 26 26 H 1.09004 * 110.73955 * 144.61172 * 5 3 2 27 27 H 1.09003 * 110.65974 * 81.06786 * 6 5 3 28 28 H 1.09003 * 110.65751 * 204.17932 * 6 5 3 29 29 H 0.96996 * 120.00033 * 179.97438 * 13 12 10 30 30 H 1.09006 * 109.91365 * 215.19313 * 18 7 6 31 31 H 1.08993 * 109.91701 * 93.91374 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5864 2.0770 -1.2513 5 6 3.5515 1.2072 0.0741 6 6 3.8366 1.4014 1.5846 7 7 2.8369 2.4158 1.9912 8 6 3.0223 3.4410 2.8463 9 8 2.1057 4.2034 3.0900 10 6 4.3260 3.6371 3.4821 11 1 5.1074 2.9034 3.3494 12 6 4.5604 4.7762 4.2624 13 7 3.5828 5.6042 4.5198 14 14 6.2703 5.1120 4.9352 15 1 6.9932 6.0270 4.0157 16 1 6.1601 5.7423 6.2752 17 1 7.0171 3.8335 5.0495 18 6 1.5973 2.0750 1.2685 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 2.0478 3.0646 -1.2430 23 1 1.9078 1.5334 -2.1398 24 1 0.5016 2.1830 -1.2629 25 1 3.8923 0.2273 -0.2602 26 1 4.0174 1.9996 -0.5118 27 1 3.6819 0.4693 2.1281 28 1 4.8488 1.7750 1.7399 29 1 3.7449 6.3929 5.0606 30 1 1.0655 2.9859 0.9935 31 1 0.9636 1.4466 1.8941 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307473836.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:35 Heat of formation + Delta-G solvation = -105.016973 kcal Electronic energy + Delta-G solvation = -14734.388671 eV Core-core repulsion = 12207.970111 eV Total energy + Delta-G solvation = -2526.418560 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.89726 -38.83855 -36.63393 -34.68479 -32.58507 -30.43790 -29.05555 -27.72482 -26.75271 -23.85049 -21.60617 -20.66352 -18.75683 -17.75565 -17.54894 -16.39351 -16.23977 -15.82470 -15.60628 -15.34550 -14.53047 -14.15998 -13.85720 -13.56042 -13.25350 -13.13333 -12.95142 -12.75593 -12.60058 -12.46954 -12.23743 -12.00486 -11.97400 -11.44182 -10.96101 -10.59070 -9.92750 -9.21315 -8.34297 -6.88801 1.39370 1.40698 1.57283 2.21619 2.40631 2.64571 2.91271 3.46186 3.62174 3.72809 3.91818 4.32257 4.39218 4.47347 4.51189 4.59463 4.70553 4.75261 4.77395 4.88471 4.98146 5.07578 5.17633 5.20279 5.31313 5.52614 5.98084 6.25267 6.36156 6.82949 7.43166 8.39585 8.62675 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.055436 B = 0.008027 C = 0.007544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.966277 B = 3487.227244 C = 3710.559096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.384 6.384 3 C 0.106 3.894 4 C -0.162 4.162 5 C -0.109 4.109 6 C 0.108 3.892 7 N -0.653 5.653 8 C 0.554 3.446 9 O -0.635 6.635 10 C -0.564 4.564 11 H 0.091 0.909 12 C 0.027 3.973 13 N -0.823 5.823 14 Si 1.002 2.998 15 H -0.260 1.260 16 H -0.272 1.272 17 H -0.246 1.246 18 C 0.088 3.912 19 H 0.031 0.969 20 H 0.059 0.941 21 H 0.107 0.893 22 H 0.060 0.940 23 H 0.088 0.912 24 H 0.066 0.934 25 H 0.111 0.889 26 H 0.091 0.909 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.276 0.724 30 H 0.045 0.955 31 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.091 -9.612 -9.933 13.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.303 6.303 3 C 0.066 3.934 4 C -0.219 4.219 5 C -0.147 4.147 6 C -0.015 4.015 7 N -0.391 5.391 8 C 0.362 3.638 9 O -0.523 6.523 10 C -0.600 4.600 11 H 0.109 0.891 12 C -0.188 4.188 13 N -0.453 5.453 14 Si 0.820 3.180 15 H -0.185 1.185 16 H -0.197 1.197 17 H -0.169 1.169 18 C -0.036 4.036 19 H 0.050 0.950 20 H 0.077 0.923 21 H 0.125 0.875 22 H 0.079 0.921 23 H 0.107 0.893 24 H 0.085 0.915 25 H 0.129 0.871 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.632 -9.144 -9.655 13.313 hybrid contribution -0.126 0.663 0.637 0.928 sum 0.506 -8.482 -9.018 12.390 Atomic orbital electron populations 1.22970 0.80361 1.03963 1.00521 1.87921 1.20937 1.26508 1.94926 1.22317 0.95019 0.83137 0.92941 1.22275 1.02293 1.00319 0.97039 1.22751 0.91777 1.04448 0.95719 1.22419 0.93653 0.90898 0.94542 1.48845 1.12432 1.30296 1.47539 1.18475 0.89546 0.77937 0.77855 1.90544 1.46231 1.48301 1.67216 1.21376 0.97519 1.08880 1.32258 0.89147 1.27065 1.03238 0.94361 0.94113 1.70201 1.34981 1.10626 1.29467 0.84953 0.75537 0.79783 0.77707 1.18484 1.19677 1.16943 1.22420 0.89269 0.98021 0.93910 0.95050 0.92273 0.87510 0.92121 0.89294 0.91533 0.87055 0.89043 0.92174 0.90074 0.91423 0.93691 0.93949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.31 113.37 1.17 1.58 16 2 O -0.38 -11.05 10.34 -148.98 -1.54 -12.59 16 3 C 0.11 3.28 1.05 -9.90 -0.01 3.27 16 4 C -0.16 -4.13 7.99 71.98 0.58 -3.56 16 5 C -0.11 -3.17 6.36 31.81 0.20 -2.97 16 6 C 0.11 4.03 6.87 86.73 0.60 4.63 16 7 N -0.65 -31.94 3.29 -814.48 -2.68 -34.62 16 8 C 0.55 33.91 7.81 86.36 0.67 34.59 16 9 O -0.64 -44.73 15.38 -4.30 -0.07 -44.80 16 10 C -0.56 -32.77 8.99 24.83 0.22 -32.55 16 11 H 0.09 4.71 6.55 -2.91 -0.02 4.69 16 12 C 0.03 1.54 5.49 85.30 0.47 2.01 16 13 N -0.82 -51.33 11.85 21.84 0.26 -51.07 16 14 Si 1.00 41.13 29.56 68.60 2.03 43.16 16 15 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 16 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 17 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 18 C 0.09 3.69 5.83 86.53 0.50 4.19 16 19 H 0.03 0.81 6.51 -2.39 -0.02 0.79 16 20 H 0.06 1.16 6.53 -2.39 -0.02 1.14 16 21 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 22 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 23 H 0.09 1.82 8.14 -2.38 -0.02 1.81 16 24 H 0.07 1.57 6.68 -2.38 -0.02 1.55 16 25 H 0.11 2.62 8.08 -2.39 -0.02 2.60 16 26 H 0.09 2.51 7.86 -2.38 -0.02 2.49 16 27 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.08 3.00 6.72 -2.39 -0.02 2.98 16 29 H 0.28 15.47 8.29 -92.71 -0.77 14.70 16 30 H 0.04 2.04 7.59 -2.38 -0.02 2.02 16 31 H 0.04 1.80 6.57 -2.39 -0.02 1.78 16 Total: -1.00 -78.14 256.42 3.52 -74.61 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 1.12 Total: 14.13 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 4.40 Total: 11.18 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -2.42 Total: -85.69 kcal Atomic # 8 Polarization: -55.78 SS G_CDS: -1.61 Total: -57.39 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -78.14 3.52 -74.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307473836.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.405 kcal (2) G-P(sol) polarization free energy of solvation -78.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds