Wall clock time and date at job start Mon Mar 30 2020 02:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.47209 * 120.01176 * 269.72690 * 11 10 9 13 13 C 1.53630 * 108.30960 * 109.90988 * 12 11 10 14 14 O 1.41711 * 110.50528 * 84.48219 * 13 12 11 15 15 C 1.41754 * 118.92140 * 291.42957 * 14 13 12 16 16 C 1.53232 * 110.37177 * 68.23655 * 15 14 13 17 17 C 1.33814 * 120.01194 * 89.99655 * 11 10 9 18 18 O 1.21285 * 120.10008 * 0.23233 * 17 11 10 19 19 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 20 20 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 21 21 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 22 22 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 23 23 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 24 24 H 1.09002 * 109.61751 * 229.61539 * 12 11 10 25 25 H 1.09007 * 109.61604 * 350.15608 * 12 11 10 26 26 H 1.09000 * 109.35229 * 324.18614 * 13 12 11 27 27 H 1.09002 * 109.20675 * 204.68620 * 13 12 11 28 28 H 1.09002 * 109.32421 * 307.96034 * 15 14 13 29 29 H 1.09003 * 109.17045 * 188.41394 * 15 14 13 30 30 H 1.09004 * 109.68096 * 157.54240 * 16 15 14 31 31 H 1.08997 * 109.68637 * 36.98835 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5130 -4.9308 -0.0012 12 6 1.1497 -5.5719 1.2732 13 6 -0.3730 -5.4683 1.4488 14 8 -1.0242 -6.5283 0.7701 15 6 -1.0030 -6.5504 -0.6471 16 6 0.4174 -6.8193 -1.1552 17 6 1.1787 -5.5101 -1.1602 18 8 1.4848 -4.9885 -2.2114 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5568 -0.8902 21 1 0.6248 -2.5571 0.8897 22 1 2.8721 -3.6043 -0.8905 23 1 2.8721 -3.6042 0.8895 24 1 1.4474 -6.6203 1.2535 25 1 1.6513 -5.0617 2.0956 26 1 -0.7192 -4.5167 1.0453 27 1 -0.6158 -5.5182 2.5102 28 1 -1.3461 -5.5885 -1.0281 29 1 -1.6682 -7.3373 -1.0028 30 1 0.3751 -7.2233 -2.1667 31 1 0.9147 -7.5307 -0.4958 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307530732.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:49 Heat of formation + Delta-G solvation = -87.357516 kcal Electronic energy + Delta-G solvation = -14713.081791 eV Core-core repulsion = 12187.429003 eV Total energy + Delta-G solvation = -2525.652788 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.10937 -37.61268 -35.38714 -33.11508 -31.70454 -30.48390 -28.15194 -25.10684 -24.24565 -22.15238 -21.21128 -18.57305 -17.08564 -16.66466 -16.26143 -16.10806 -15.16745 -14.64220 -14.33016 -13.78123 -13.44453 -12.95751 -12.55023 -12.40824 -12.09888 -11.76055 -11.51326 -11.25923 -10.95382 -10.82736 -10.65604 -9.98777 -9.88949 -9.61411 -9.39300 -9.09865 -8.37405 -8.05374 -6.02875 -4.06138 3.02432 3.32438 3.36614 3.38457 3.47650 3.74213 4.44829 4.65532 5.01840 5.15647 5.16666 5.19137 5.33132 5.35657 5.52773 5.70288 5.88210 5.90863 6.04154 6.10015 6.50712 6.82022 6.89444 7.37595 7.57818 7.69570 7.94170 7.96805 8.33946 8.63310 9.00117 9.57814 11.08557 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044882 B = 0.007861 C = 0.007496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.702380 B = 3561.136810 C = 3734.556395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.015 3.985 10 C 0.114 3.886 11 N -0.609 5.609 12 C 0.077 3.923 13 C 0.045 3.955 14 O -0.392 6.392 15 C 0.076 3.924 16 C -0.176 4.176 17 C 0.504 3.496 18 O -0.543 6.543 19 H 0.262 0.738 20 H 0.020 0.980 21 H 0.015 0.985 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.096 0.904 26 H 0.067 0.933 27 H 0.105 0.895 28 H 0.056 0.944 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.503 -13.227 3.409 13.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.023 4.023 10 C -0.006 4.006 11 N -0.341 5.341 12 C -0.047 4.047 13 C -0.033 4.033 14 O -0.311 6.311 15 C -0.001 4.001 16 C -0.217 4.217 17 C 0.291 3.709 18 O -0.420 6.420 19 H 0.071 0.929 20 H 0.038 0.962 21 H 0.034 0.966 22 H 0.091 0.909 23 H 0.082 0.918 24 H 0.096 0.904 25 H 0.115 0.885 26 H 0.085 0.915 27 H 0.123 0.877 28 H 0.074 0.926 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.566 -12.944 2.954 13.289 hybrid contribution 0.609 1.214 -0.082 1.361 sum 0.043 -11.730 2.872 12.077 Atomic orbital electron populations 1.69959 1.06092 1.26805 1.50394 1.24998 0.94863 0.99294 0.95109 0.86609 0.79547 0.82905 0.78653 1.20156 1.21246 1.20203 1.21059 0.93009 0.90743 1.51281 0.92574 1.19376 0.94373 0.91095 0.97464 1.21939 0.95452 0.81764 1.01468 1.48244 1.56563 1.23991 1.05315 1.22593 0.96370 0.98556 0.87145 1.23123 0.91528 0.90982 0.97650 1.87020 1.75854 1.49261 1.18962 1.22302 0.94409 1.02511 0.80897 1.22753 0.97815 0.96360 1.04747 1.20523 0.79934 0.86586 0.83817 1.90717 1.54737 1.65588 1.30973 0.92887 0.96197 0.96631 0.90945 0.91780 0.90436 0.88524 0.91465 0.87733 0.92616 0.87902 0.87899 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.09 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.01 0.39 5.30 -27.88 -0.15 0.24 16 10 C 0.11 2.45 5.35 -4.04 -0.02 2.43 16 11 N -0.61 -11.02 2.49 -172.68 -0.43 -11.45 16 12 C 0.08 1.04 6.01 -3.33 -0.02 1.02 16 13 C 0.04 0.61 6.68 37.48 0.25 0.86 16 14 O -0.39 -5.38 10.27 -35.18 -0.36 -5.74 16 15 C 0.08 0.98 6.60 37.28 0.25 1.23 16 16 C -0.18 -2.36 5.64 -27.40 -0.15 -2.51 16 17 C 0.50 9.47 6.85 -11.05 -0.08 9.39 16 18 O -0.54 -12.69 16.66 5.55 0.09 -12.60 16 19 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 20 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.02 0.42 8.07 -51.93 -0.42 0.00 16 22 H 0.07 1.68 7.41 -51.93 -0.38 1.29 16 23 H 0.06 1.23 7.87 -51.93 -0.41 0.83 16 24 H 0.08 0.88 7.05 -51.93 -0.37 0.52 16 25 H 0.10 1.19 7.78 -51.93 -0.40 0.78 16 26 H 0.07 1.14 8.00 -51.93 -0.42 0.72 16 27 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 0.84 7.90 -51.93 -0.41 0.43 16 29 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.09 1.08 7.10 -51.93 -0.37 0.71 16 LS Contribution 260.33 15.07 3.92 3.92 Total: -1.00 -33.61 260.33 -5.80 -39.41 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -4.41 Total: -3.06 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -0.33 Total: -0.95 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.31 Total: -37.81 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.27 Total: -18.34 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -33.61 -5.80 -39.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307530732.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.947 kcal (2) G-P(sol) polarization free energy of solvation -33.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds