Wall clock time and date at job start Mon Mar 30 2020 02:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86802 * 119.99910 * 2 1 4 4 H 1.48499 * 109.47248 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47238 * 300.00448 * 3 2 1 6 6 H 1.48506 * 109.47084 * 60.00573 * 3 2 1 7 7 C 1.40049 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00171 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99597 * 359.97438 * 7 2 1 10 10 O 1.21688 * 120.00500 * 0.02562 * 9 7 2 11 11 N 1.34781 * 119.99909 * 180.02562 * 9 7 2 12 12 C 1.47781 * 134.37520 * 180.02562 * 11 9 7 13 13 C 1.52966 * 85.76094 * 156.12118 * 12 11 9 14 14 C 1.52793 * 121.30511 * 257.54817 * 13 12 11 15 15 C 1.53979 * 86.74469 * 209.09249 * 14 13 12 16 16 F 1.39904 * 113.56997 * 270.03756 * 15 14 13 17 17 C 1.52806 * 121.29972 * 148.52601 * 13 12 11 18 18 C 1.47788 * 134.37125 * 359.97438 * 11 9 7 19 19 H 0.96996 * 120.00088 * 359.97438 * 1 2 3 20 20 H 1.08995 * 113.82418 * 41.91513 * 12 11 9 21 21 H 1.08998 * 113.82765 * 270.33068 * 12 11 9 22 22 H 1.09004 * 113.67029 * 323.54814 * 14 13 12 23 23 H 1.08999 * 113.67244 * 94.62557 * 14 13 12 24 24 H 1.08997 * 113.64459 * 139.26571 * 15 14 13 25 25 H 1.09003 * 113.66689 * 265.37764 * 17 13 12 26 26 H 1.09001 * 113.66936 * 36.44879 * 17 13 12 27 27 H 1.08994 * 113.82470 * 89.67120 * 18 11 9 28 28 H 1.09004 * 113.82792 * 318.08327 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8818 2.3965 -1.2124 6 1 1.8820 2.3964 1.2126 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4806 -0.0005 11 7 1.9490 -3.6477 -0.0005 12 6 1.5510 -5.0709 -0.0010 13 6 2.9251 -5.3376 -0.6181 14 6 3.0844 -5.6122 -2.1126 15 6 4.3166 -6.4556 -1.7369 16 9 5.5087 -5.7237 -1.7109 17 6 3.6771 -6.6402 -0.3485 18 6 3.3807 -4.0145 -0.0010 19 1 -0.4850 0.8400 0.0004 20 1 0.7181 -5.2949 -0.6675 21 1 1.4265 -5.4936 0.9959 22 1 2.2687 -6.1956 -2.5398 23 1 3.3237 -4.7242 -2.6977 24 1 4.4017 -7.3823 -2.3044 25 1 4.3892 -6.5721 0.4739 26 1 3.0285 -7.5134 -0.2780 27 1 3.8090 -4.1180 0.9959 28 1 3.9912 -3.4052 -0.6675 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307565075.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:33 Heat of formation + Delta-G solvation = -55.419518 kcal Electronic energy + Delta-G solvation = -14164.704458 eV Core-core repulsion = 11516.976300 eV Total energy + Delta-G solvation = -2647.728158 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.53742 -41.25557 -38.50327 -35.75575 -34.65945 -29.77940 -27.56304 -26.96334 -26.82174 -23.45187 -21.03342 -19.24432 -18.68849 -17.69179 -17.15923 -16.62168 -16.46526 -16.09651 -15.65463 -15.52831 -14.44832 -14.16169 -14.01993 -13.65616 -13.31320 -12.99918 -12.84273 -12.80865 -12.54311 -12.00176 -11.93731 -11.53756 -11.21025 -11.11805 -10.99863 -9.88635 -9.18359 -8.35160 -6.92012 1.35321 1.35965 1.54330 2.18081 2.38059 2.59540 3.26702 3.35046 3.41290 3.50953 3.78076 3.91090 4.25721 4.45564 4.57627 4.65371 4.71716 4.78734 4.90373 4.94537 5.09555 5.13080 5.23254 5.25421 5.44406 5.92201 6.40393 6.80240 7.52738 8.38738 8.61119 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.044659 B = 0.008277 C = 0.007359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.819471 B = 3382.250985 C = 3804.170787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.028 3.972 3 Si 1.001 2.999 4 H -0.250 1.250 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.567 4.567 8 H 0.079 0.921 9 C 0.557 3.443 10 O -0.635 6.635 11 N -0.681 5.681 12 C 0.115 3.885 13 C -0.114 4.114 14 C -0.139 4.139 15 C 0.071 3.929 16 F -0.215 7.215 17 C -0.127 4.127 18 C 0.134 3.866 19 H 0.277 0.723 20 H 0.057 0.943 21 H 0.080 0.920 22 H 0.121 0.879 23 H 0.058 0.942 24 H 0.135 0.865 25 H 0.089 0.911 26 H 0.133 0.867 27 H 0.083 0.917 28 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.526 -12.006 -2.337 16.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.173 1.173 5 H -0.189 1.189 6 H -0.188 1.188 7 C -0.603 4.603 8 H 0.097 0.903 9 C 0.364 3.636 10 O -0.523 6.523 11 N -0.419 5.419 12 C -0.008 4.008 13 C -0.115 4.115 14 C -0.177 4.177 15 C 0.035 3.965 16 F -0.196 7.196 17 C -0.165 4.165 18 C 0.011 3.989 19 H 0.087 0.913 20 H 0.075 0.925 21 H 0.098 0.902 22 H 0.139 0.861 23 H 0.077 0.923 24 H 0.152 0.848 25 H 0.108 0.892 26 H 0.151 0.849 27 H 0.101 0.899 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.624 -11.711 -2.337 15.337 hybrid contribution -0.102 1.085 0.132 1.097 sum 9.522 -10.627 -2.205 14.438 Atomic orbital electron populations 1.70188 1.09561 1.29086 1.36346 1.27027 0.95596 1.04977 0.91077 0.84938 0.79129 0.75091 0.78911 1.17285 1.18901 1.18836 1.21342 0.94327 0.89894 1.54752 0.90277 1.18407 0.86193 0.83155 0.75832 1.90538 1.16089 1.87281 1.58345 1.50163 1.08382 1.04656 1.78730 1.22822 0.96876 0.81298 0.99820 1.23001 0.95145 0.95576 0.97774 1.23378 0.99189 1.00782 0.94347 1.22593 0.79454 0.94757 0.99650 1.92781 1.49049 1.80318 1.97456 1.23425 0.99255 0.96788 0.97059 1.22648 0.83973 0.92479 0.99805 0.91349 0.92493 0.90191 0.86051 0.92300 0.84763 0.89222 0.84895 0.89876 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.12 11.83 21.84 0.26 -51.86 15 2 C 0.03 1.63 5.50 85.31 0.47 2.10 15 3 Si 1.00 42.54 29.56 68.60 2.03 44.57 15 4 H -0.25 -9.94 7.11 99.48 0.71 -9.23 15 5 H -0.26 -10.69 7.11 99.48 0.71 -9.98 15 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 15 7 C -0.57 -34.26 9.33 24.83 0.23 -34.02 15 8 H 0.08 4.41 7.67 -2.91 -0.02 4.39 15 9 C 0.56 34.81 7.98 86.36 0.69 35.50 15 10 O -0.63 -45.31 15.75 -4.31 -0.07 -45.37 15 11 N -0.68 -33.32 3.61 -858.11 -3.10 -36.42 15 12 C 0.11 4.27 8.60 86.12 0.74 5.01 15 13 C -0.11 -3.31 1.24 -52.30 -0.06 -3.37 15 14 C -0.14 -3.48 7.75 30.86 0.24 -3.24 15 15 C 0.07 1.37 5.68 31.25 0.18 1.54 15 16 F -0.22 -5.54 17.39 44.97 0.78 -4.76 15 17 C -0.13 -2.34 7.75 30.86 0.24 -2.10 15 18 C 0.13 5.00 8.21 86.11 0.71 5.71 15 19 H 0.28 15.69 8.29 -92.71 -0.77 14.92 15 20 H 0.06 2.19 8.14 -2.39 -0.02 2.17 15 21 H 0.08 2.69 8.14 -2.39 -0.02 2.67 15 22 H 0.12 2.49 8.14 -2.38 -0.02 2.47 15 23 H 0.06 1.76 8.14 -2.39 -0.02 1.74 15 24 H 0.13 1.58 8.14 -2.39 -0.02 1.56 15 25 H 0.09 1.58 8.14 -2.39 -0.02 1.56 15 26 H 0.13 1.66 8.14 -2.39 -0.02 1.64 15 27 H 0.08 2.79 8.14 -2.39 -0.02 2.77 15 28 H 0.06 2.38 8.14 -2.38 -0.02 2.36 15 Total: -1.00 -82.07 250.73 4.48 -77.59 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 1.15 Total: 9.13 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 3.43 Total: 7.13 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -2.84 Total: -88.29 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -0.07 Total: -45.37 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.78 Total: -4.76 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -82.07 4.48 -77.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307565075.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.172 kcal (2) G-P(sol) polarization free energy of solvation -82.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds