Wall clock time and date at job start Mon Mar 30 2020 02:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99962 * 2 1 4 4 H 1.48491 * 109.47531 * 240.00011 * 3 2 1 5 5 H 1.48503 * 109.46822 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46912 * 120.00086 * 3 2 1 7 7 C 1.37880 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00000 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00002 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47403 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00416 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99923 * 0.02562 * 11 10 9 13 13 C 1.50694 * 119.99959 * 180.02562 * 11 10 9 14 14 H 1.09004 * 110.81814 * 61.88673 * 13 11 10 15 15 C 1.54886 * 110.75826 * 298.54876 * 13 11 10 16 16 C 1.54266 * 104.19669 * 203.74443 * 15 13 11 17 17 C 1.53874 * 106.59955 * 23.61191 * 16 15 13 18 18 H 1.08997 * 110.03496 * 119.33456 * 17 16 15 19 19 O 1.42905 * 110.03357 * 240.71576 * 17 16 15 20 20 C 1.54268 * 106.59630 * 359.97438 * 17 16 15 21 21 H 0.96996 * 120.00023 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.46687 * 60.00828 * 9 7 2 23 23 H 1.09002 * 109.47768 * 300.00842 * 9 7 2 24 24 H 0.97001 * 119.99819 * 0.02562 * 10 9 7 25 25 H 1.08994 * 110.48675 * 85.06764 * 15 13 11 26 26 H 1.09003 * 110.59851 * 322.47798 * 15 13 11 27 27 H 1.09001 * 110.03718 * 264.32404 * 16 15 13 28 28 H 1.08998 * 110.07566 * 142.91659 * 16 15 13 29 29 H 0.96696 * 114.00036 * 298.54407 * 19 17 16 30 30 H 1.09007 * 110.48467 * 95.07375 * 20 17 16 31 31 H 1.08999 * 110.48596 * 217.71186 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8834 -0.0011 12 8 0.5615 -5.1050 -0.0020 13 6 2.7332 -6.0287 -0.0005 14 1 3.3492 -6.0113 0.8987 15 6 3.6170 -5.9959 -1.2720 16 6 4.0864 -7.4553 -1.4442 17 6 3.0543 -8.3374 -0.7201 18 1 2.5891 -9.0246 -1.4267 19 8 3.6880 -9.0706 0.3302 20 6 1.9941 -7.3832 -0.1325 21 1 -0.4850 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8904 23 1 0.6246 -2.5571 0.8896 24 1 3.1567 -3.4354 -0.0002 25 1 4.4714 -5.3352 -1.1258 26 1 3.0337 -5.6783 -2.1363 27 1 5.0707 -7.5866 -0.9946 28 1 4.1221 -7.7145 -2.5023 29 1 4.3805 -9.6734 0.0267 30 1 1.1465 -7.2900 -0.8116 31 1 1.6640 -7.7350 0.8449 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307745430.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:12 Heat of formation + Delta-G solvation = -111.628439 kcal Electronic energy + Delta-G solvation = -14086.651813 eV Core-core repulsion = 11559.946559 eV Total energy + Delta-G solvation = -2526.705255 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.57513 -37.78439 -34.76041 -34.15364 -32.28342 -29.04079 -28.29544 -26.68959 -22.98256 -21.29377 -20.39147 -19.28945 -17.71672 -17.00302 -15.79674 -15.50910 -15.00303 -14.46695 -14.34564 -13.76696 -13.57862 -12.93969 -12.52809 -12.05509 -11.84748 -11.61690 -11.33901 -11.08473 -10.92465 -10.85120 -10.75214 -10.63633 -10.29131 -10.00171 -9.39576 -8.93715 -8.71711 -7.84897 -6.15329 -4.22325 3.25905 3.30647 3.32211 3.40733 4.07259 4.20524 4.37648 4.50121 4.63862 4.99914 5.20528 5.24176 5.42648 5.50622 5.59898 5.63926 5.79046 5.86471 5.97324 6.17440 6.27395 6.38686 7.33018 7.47382 7.53846 7.56669 7.68450 7.98882 8.66349 8.79844 9.14115 9.44445 10.94914 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.064921 B = 0.005867 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.190431 B = 4771.186839 C = 5043.434103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.249 3.751 10 N -0.711 5.711 11 C 0.505 3.495 12 O -0.558 6.558 13 C -0.114 4.114 14 H 0.099 0.901 15 C -0.112 4.112 16 C -0.155 4.155 17 C 0.097 3.903 18 H 0.058 0.942 19 O -0.566 6.566 20 C -0.096 4.096 21 H 0.266 0.734 22 H 0.026 0.974 23 H 0.026 0.974 24 H 0.390 0.610 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.373 0.627 30 H 0.090 0.910 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.695 -13.567 -2.704 16.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.128 3.872 10 N -0.359 5.359 11 C 0.289 3.711 12 O -0.437 6.437 13 C -0.135 4.135 14 H 0.117 0.883 15 C -0.150 4.150 16 C -0.193 4.193 17 C 0.038 3.962 18 H 0.076 0.924 19 O -0.371 6.371 20 C -0.134 4.134 21 H 0.076 0.924 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.223 0.777 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.220 0.780 30 H 0.109 0.891 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.227 -13.210 -2.344 15.738 hybrid contribution 1.319 0.792 -0.370 1.583 sum 9.546 -12.418 -2.714 15.896 Atomic orbital electron populations 1.69963 1.06121 1.27397 1.48860 1.24952 0.94906 0.99432 0.94702 0.86474 0.79413 0.82332 0.78675 1.20081 1.21061 1.20073 1.21196 0.93211 0.90504 1.53274 0.91980 1.19098 0.88377 0.82058 0.97687 1.46464 1.11042 1.06178 1.72210 1.20331 0.89221 0.84301 0.77207 1.90643 1.16958 1.84951 1.51166 1.22290 0.96976 0.94263 1.00021 0.88274 1.22284 0.99170 0.96230 0.97277 1.22919 0.99519 0.96025 1.00810 1.22538 0.92796 0.92476 0.88385 0.92375 1.86582 1.55510 1.59373 1.35668 1.22198 0.96592 0.91671 1.02943 0.92398 0.95584 0.95595 0.77746 0.90782 0.90806 0.90768 0.91248 0.78048 0.89112 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -14.90 9.28 -34.44 -0.32 -15.22 16 8 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 9 C 0.25 6.70 5.43 -5.20 -0.03 6.67 16 10 N -0.71 -15.29 5.49 -61.48 -0.34 -15.63 16 11 C 0.50 10.34 7.15 -10.99 -0.08 10.26 16 12 O -0.56 -13.72 15.79 5.56 0.09 -13.63 16 13 C -0.11 -1.72 3.29 -89.80 -0.30 -2.02 16 14 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 15 C -0.11 -1.38 6.21 -25.07 -0.16 -1.53 16 16 C -0.15 -1.52 6.60 -25.61 -0.17 -1.69 16 17 C 0.10 1.07 4.27 -25.61 -0.11 0.96 16 18 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 19 O -0.57 -6.18 13.22 -35.23 -0.47 -6.64 16 20 C -0.10 -1.38 5.60 -25.08 -0.14 -1.52 16 21 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.39 7.22 8.32 -40.82 -0.34 6.88 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 27 H 0.07 0.65 7.95 -51.93 -0.41 0.24 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.37 2.30 9.10 45.56 0.41 2.71 16 30 H 0.09 1.40 7.53 -51.92 -0.39 1.01 16 31 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 LS Contribution 265.69 15.07 4.00 4.00 Total: -1.00 -32.95 265.69 -6.02 -38.98 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -3.64 Total: 4.99 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -1.39 Total: -2.41 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.40 Total: -41.23 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.38 Total: -20.28 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.95 -6.02 -38.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307745430.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.649 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds