Wall clock time and date at job start Mon Mar 30 2020 02:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99962 * 2 1 4 4 H 1.48491 * 109.47531 * 240.00011 * 3 2 1 5 5 H 1.48503 * 109.46822 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46912 * 120.00086 * 3 2 1 7 7 C 1.37880 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00000 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00002 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47403 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00416 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99923 * 0.02562 * 11 10 9 13 13 C 1.50694 * 119.99959 * 180.02562 * 11 10 9 14 14 H 1.09004 * 110.81814 * 61.88673 * 13 11 10 15 15 C 1.54886 * 110.75826 * 298.54876 * 13 11 10 16 16 C 1.54266 * 104.19669 * 203.74443 * 15 13 11 17 17 C 1.53874 * 106.59955 * 23.61191 * 16 15 13 18 18 H 1.08997 * 110.03496 * 119.33456 * 17 16 15 19 19 O 1.42905 * 110.03357 * 240.71576 * 17 16 15 20 20 C 1.54268 * 106.59630 * 359.97438 * 17 16 15 21 21 H 0.96996 * 120.00023 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.46687 * 60.00828 * 9 7 2 23 23 H 1.09002 * 109.47768 * 300.00842 * 9 7 2 24 24 H 0.97001 * 119.99819 * 0.02562 * 10 9 7 25 25 H 1.08994 * 110.48675 * 85.06764 * 15 13 11 26 26 H 1.09003 * 110.59851 * 322.47798 * 15 13 11 27 27 H 1.09001 * 110.03718 * 264.32404 * 16 15 13 28 28 H 1.08998 * 110.07566 * 142.91659 * 16 15 13 29 29 H 0.96696 * 114.00036 * 298.54407 * 19 17 16 30 30 H 1.09007 * 110.48467 * 95.07375 * 20 17 16 31 31 H 1.08999 * 110.48596 * 217.71186 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8834 -0.0011 12 8 0.5615 -5.1050 -0.0020 13 6 2.7332 -6.0287 -0.0005 14 1 3.3492 -6.0113 0.8987 15 6 3.6170 -5.9959 -1.2720 16 6 4.0864 -7.4553 -1.4442 17 6 3.0543 -8.3374 -0.7201 18 1 2.5891 -9.0246 -1.4267 19 8 3.6880 -9.0706 0.3302 20 6 1.9941 -7.3832 -0.1325 21 1 -0.4850 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8904 23 1 0.6246 -2.5571 0.8896 24 1 3.1567 -3.4354 -0.0002 25 1 4.4714 -5.3352 -1.1258 26 1 3.0337 -5.6783 -2.1363 27 1 5.0707 -7.5866 -0.9946 28 1 4.1221 -7.7145 -2.5023 29 1 4.3805 -9.6734 0.0267 30 1 1.1465 -7.2900 -0.8116 31 1 1.6640 -7.7350 0.8449 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307745430.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:11 Heat of formation + Delta-G solvation = -138.264463 kcal Electronic energy + Delta-G solvation = -14087.806838 eV Core-core repulsion = 11559.946559 eV Total energy + Delta-G solvation = -2527.860279 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.01768 -39.01954 -36.18198 -35.73959 -34.32929 -30.33547 -29.57541 -28.32951 -24.90086 -22.76897 -21.34380 -20.88301 -19.08130 -18.31077 -17.55191 -17.08480 -16.58029 -16.15647 -15.57520 -15.19460 -14.85294 -14.29106 -14.09378 -13.87341 -13.46990 -12.99617 -12.95797 -12.68310 -12.33595 -12.24092 -12.09255 -11.77716 -11.54023 -11.50161 -10.82977 -10.80182 -10.65785 -9.84846 -8.29748 -6.46973 1.42841 1.47208 1.55493 1.73680 2.31919 2.58326 3.04935 3.38118 3.45992 3.63349 3.93802 4.31633 4.37567 4.44074 4.52124 4.52893 4.85830 4.91983 5.06638 5.10879 5.20282 5.20749 5.23948 5.34371 5.47674 5.68288 5.83624 6.63637 6.89022 7.01003 7.22302 7.47210 8.82432 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.064921 B = 0.005867 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.190431 B = 4771.186839 C = 5043.434103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.264 3.736 10 N -0.705 5.705 11 C 0.500 3.500 12 O -0.605 6.605 13 C -0.105 4.105 14 H 0.116 0.884 15 C -0.111 4.111 16 C -0.143 4.143 17 C 0.105 3.895 18 H 0.076 0.924 19 O -0.582 6.582 20 C -0.103 4.103 21 H 0.269 0.731 22 H -0.013 1.013 23 H -0.015 1.015 24 H 0.408 0.592 25 H 0.092 0.908 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.396 0.604 30 H 0.071 0.929 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.825 -13.873 -3.196 19.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.595 4.595 8 H 0.102 0.898 9 C 0.142 3.858 10 N -0.354 5.354 11 C 0.288 3.712 12 O -0.488 6.488 13 C -0.126 4.126 14 H 0.134 0.866 15 C -0.149 4.149 16 C -0.181 4.181 17 C 0.046 3.954 18 H 0.093 0.907 19 O -0.391 6.391 20 C -0.141 4.141 21 H 0.078 0.922 22 H 0.005 0.995 23 H 0.003 0.997 24 H 0.244 0.756 25 H 0.110 0.890 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.246 0.754 30 H 0.090 0.910 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.421 -13.560 -2.842 17.956 hybrid contribution 0.281 0.810 -0.191 0.878 sum 11.703 -12.750 -3.033 17.570 Atomic orbital electron populations 1.70134 1.08353 1.28677 1.49880 1.26092 0.95772 1.03983 0.93748 0.85182 0.77890 0.76451 0.79535 1.18517 1.21065 1.18680 1.21586 0.94303 0.90531 1.53098 0.89773 1.18556 0.88787 0.84525 0.93979 1.46211 1.11124 1.05525 1.72507 1.21402 0.89626 0.85019 0.75151 1.90617 1.19611 1.85637 1.52916 1.22298 0.96108 0.91682 1.02497 0.86588 1.22336 0.98864 0.98846 0.94805 1.22873 0.99746 0.93291 1.02163 1.22382 0.92306 0.92412 0.88270 0.90659 1.86524 1.56530 1.60030 1.36042 1.22205 0.97419 0.92416 1.02077 0.92217 0.99473 0.99712 0.75633 0.88961 0.92164 0.88769 0.89145 0.75409 0.91007 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 2 C 0.00 0.20 5.46 84.66 0.46 0.67 16 3 Si 0.99 42.47 29.54 68.60 2.03 44.50 16 4 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 5 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.56 -30.73 9.28 25.60 0.24 -30.50 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 9 C 0.26 14.90 5.43 85.63 0.46 15.37 16 10 N -0.70 -30.80 5.49 -466.80 -2.56 -33.36 16 11 C 0.50 21.00 7.15 87.65 0.63 21.63 16 12 O -0.61 -31.40 15.79 -3.03 -0.05 -31.45 16 13 C -0.10 -3.05 3.29 -10.26 -0.03 -3.09 16 14 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 15 C -0.11 -2.45 6.21 31.67 0.20 -2.25 16 16 C -0.14 -2.25 6.60 31.32 0.21 -2.04 16 17 C 0.10 2.03 4.27 31.32 0.13 2.16 16 18 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 19 O -0.58 -10.90 13.22 -148.98 -1.97 -12.87 16 20 C -0.10 -2.91 5.60 31.66 0.18 -2.74 16 21 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 22 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 23 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 24 H 0.41 14.72 8.32 -92.71 -0.77 13.95 16 25 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.06 1.51 8.04 -2.39 -0.02 1.49 16 27 H 0.09 1.17 7.95 -2.39 -0.02 1.15 16 28 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.40 3.35 9.10 -74.06 -0.67 2.68 16 30 H 0.07 2.28 7.53 -2.38 -0.02 2.26 16 31 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 Total: -1.00 -74.37 265.69 -0.11 -74.47 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -0.31 Total: 16.11 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 2.47 Total: -0.79 kcal Atomic # 7 Polarization: -87.70 SS G_CDS: -2.28 Total: -89.98 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: -2.02 Total: -44.31 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -74.37 -0.11 -74.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307745430.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.792 kcal (2) G-P(sol) polarization free energy of solvation -74.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds