Wall clock time and date at job start Mon Mar 30 2020 02:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99746 * 2 1 4 4 H 1.48500 * 109.47093 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46950 * 299.99165 * 3 2 1 6 6 H 1.48501 * 109.47525 * 59.99245 * 3 2 1 7 7 C 1.37877 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99595 * 175.14913 * 7 2 1 9 9 C 1.50690 * 120.00393 * 355.42707 * 7 2 1 10 10 C 1.53004 * 115.54985 * 274.92636 * 9 7 2 11 11 N 1.46894 * 109.46994 * 294.79966 * 10 9 7 12 12 C 1.46906 * 110.99880 * 185.35417 * 11 10 9 13 13 C 1.53044 * 113.14996 * 255.37162 * 12 11 10 14 14 S 1.81429 * 89.89049 * 211.85287 * 13 12 11 15 15 C 1.53045 * 113.14879 * 154.99969 * 12 11 10 16 16 C 1.53006 * 117.50031 * 129.25609 * 9 7 2 17 17 C 1.53004 * 117.50072 * 60.59547 * 9 7 2 18 18 H 0.96989 * 120.00304 * 5.00881 * 1 2 3 19 19 H 1.08997 * 109.47094 * 54.79989 * 10 9 7 20 20 H 1.09007 * 109.46789 * 174.80114 * 10 9 7 21 21 H 1.00898 * 111.00357 * 61.39799 * 11 10 9 22 22 H 1.09001 * 112.49629 * 25.21852 * 12 11 10 23 23 H 1.08996 * 113.14916 * 327.11842 * 13 12 11 24 24 H 1.09000 * 113.14453 * 96.59372 * 13 12 11 25 25 H 1.09003 * 113.15210 * 263.40469 * 15 12 11 26 26 H 1.08997 * 113.15098 * 32.85279 * 15 12 11 27 27 H 1.08996 * 117.49453 * 359.97438 * 16 9 7 28 28 H 1.08997 * 117.50127 * 145.02512 * 16 9 7 29 29 H 1.08996 * 117.50252 * 214.98083 * 17 9 7 30 30 H 1.09000 * 117.49622 * 359.97438 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0817 -1.1957 -0.0786 9 6 1.2547 -2.4970 0.1052 10 6 0.9188 -2.9528 1.5266 11 7 2.1613 -3.2475 2.2527 12 6 1.8750 -3.8091 3.5796 13 6 2.0950 -2.8086 4.7167 14 16 2.5838 -4.1684 5.8139 15 6 3.0135 -4.6741 4.1253 16 6 1.5732 -3.5803 -0.9274 17 6 0.2454 -2.8219 -0.9979 18 1 -0.4850 0.8367 -0.0733 19 1 0.3752 -2.1616 2.0429 20 1 0.3013 -3.8500 1.4840 21 1 2.7414 -2.4252 2.3256 22 1 0.9037 -4.3018 3.6233 23 1 2.9042 -2.1059 4.5184 24 1 1.1782 -2.3112 5.0330 25 1 2.8661 -5.7392 3.9464 26 1 3.9998 -4.3314 3.8126 27 1 2.3248 -3.3503 -1.6825 28 1 1.5430 -4.6176 -0.5942 29 1 -0.6577 -3.3606 -0.7111 30 1 0.1234 -2.0929 -1.7990 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308082843.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:10 Heat of formation + Delta-G solvation = 42.111992 kcal Electronic energy + Delta-G solvation = -12362.068153 eV Core-core repulsion = 10284.782455 eV Total energy + Delta-G solvation = -2077.285698 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -37.72450 -36.09329 -31.98952 -31.39000 -26.07798 -25.73542 -24.27011 -21.09590 -20.72166 -19.06295 -16.38170 -16.08705 -15.31366 -14.78606 -14.67219 -13.89931 -13.29671 -12.95515 -12.77624 -12.57281 -11.76843 -11.52715 -11.34549 -11.01249 -10.95051 -10.71595 -10.51448 -10.25117 -10.07145 -9.35597 -8.88731 -8.45165 -8.13090 -7.75343 -7.65814 -6.06017 -4.14046 1.93817 2.08717 3.23268 3.33034 3.36293 4.35646 4.52292 4.80101 5.06914 5.21595 5.23487 5.48402 5.55747 5.59174 5.79644 6.00805 6.10507 6.42798 6.50875 6.75490 6.79012 6.88931 7.18049 7.42635 7.56308 7.80545 7.84906 8.06033 8.45347 8.90323 9.52424 11.00913 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.031542 B = 0.008852 C = 0.007515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.493563 B = 3162.358452 C = 3724.930116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.069 3.931 3 Si 0.886 3.114 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.494 4.494 8 H 0.061 0.939 9 C 0.044 3.956 10 C 0.104 3.896 11 N -0.662 5.662 12 C 0.090 3.910 13 C -0.106 4.106 14 S -0.324 6.324 15 C -0.065 4.065 16 C -0.201 4.201 17 C -0.155 4.155 18 H 0.259 0.741 19 H 0.035 0.965 20 H 0.043 0.957 21 H 0.354 0.646 22 H 0.110 0.890 23 H 0.105 0.895 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.105 0.895 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.651 -5.417 5.665 8.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.134 4.134 3 Si 0.714 3.286 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.532 4.532 8 H 0.079 0.921 9 C 0.043 3.957 10 C -0.025 4.025 11 N -0.293 5.293 12 C -0.023 4.023 13 C -0.256 4.256 14 S -0.100 6.100 15 C -0.214 4.214 16 C -0.238 4.238 17 C -0.193 4.193 18 H 0.069 0.931 19 H 0.053 0.947 20 H 0.061 0.939 21 H 0.175 0.825 22 H 0.127 0.873 23 H 0.123 0.877 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.124 0.876 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.605 -6.310 6.802 9.637 hybrid contribution 0.077 2.140 -0.565 2.215 sum 2.682 -4.170 6.237 7.968 Atomic orbital electron populations 1.70008 1.05826 1.26504 1.49212 1.25013 0.94798 0.98850 0.94711 0.86638 0.80353 0.84043 0.77610 1.19627 1.21072 1.21092 1.20509 0.92851 0.88726 1.51095 0.92112 1.18749 0.98109 0.92876 0.85931 1.21547 0.88648 0.96892 0.95393 1.60363 1.19205 1.36784 1.12917 1.22937 0.97905 0.93251 0.88257 1.25391 1.05077 0.99960 0.95202 1.88770 1.82497 1.24270 1.14442 1.24602 1.03411 1.04526 0.88854 1.22884 0.99776 0.95853 1.05310 1.22506 0.90874 1.01735 1.04217 0.93128 0.94659 0.93895 0.82520 0.87253 0.87672 0.88911 0.88872 0.87646 0.90903 0.91711 0.92296 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.95 12.65 55.43 0.70 -23.25 16 2 C 0.07 1.81 5.43 -17.82 -0.10 1.72 16 3 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.49 -12.68 8.33 -34.45 -0.29 -12.96 16 8 H 0.06 1.57 7.82 -52.48 -0.41 1.16 16 9 C 0.04 1.03 1.65 -155.66 -0.26 0.77 16 10 C 0.10 2.14 5.44 -3.83 -0.02 2.12 16 11 N -0.66 -11.62 6.55 -117.79 -0.77 -12.40 16 12 C 0.09 1.31 3.83 -67.66 -0.26 1.06 16 13 C -0.11 -1.48 7.54 37.18 0.28 -1.20 16 14 S -0.32 -4.64 24.80 -107.50 -2.67 -7.30 16 15 C -0.06 -0.85 7.76 37.18 0.29 -0.56 16 16 C -0.20 -4.34 9.96 -26.69 -0.27 -4.60 16 17 C -0.16 -3.59 9.14 -26.69 -0.24 -3.83 16 18 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 19 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 20 H 0.04 0.84 7.96 -51.93 -0.41 0.43 16 21 H 0.35 6.46 7.80 -39.29 -0.31 6.15 16 22 H 0.11 1.59 7.78 -51.93 -0.40 1.19 16 23 H 0.10 1.43 7.88 -51.93 -0.41 1.02 16 24 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 LS Contribution 266.62 15.07 4.02 4.02 Total: -1.00 -26.36 266.62 -9.06 -35.42 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -4.46 Total: 5.74 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -0.86 Total: -17.50 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: -0.07 Total: -35.64 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: -4.64 SS G_CDS: -2.67 Total: -7.30 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -26.36 -9.06 -35.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308082843.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.534 kcal (2) G-P(sol) polarization free energy of solvation -26.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds