Wall clock time and date at job start Mon Mar 30 2020 02:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99746 * 2 1 4 4 H 1.48500 * 109.47093 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46950 * 299.99165 * 3 2 1 6 6 H 1.48501 * 109.47525 * 59.99245 * 3 2 1 7 7 C 1.37877 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99595 * 175.14913 * 7 2 1 9 9 C 1.50690 * 120.00393 * 355.42707 * 7 2 1 10 10 C 1.53004 * 115.54985 * 274.92636 * 9 7 2 11 11 N 1.46894 * 109.46994 * 294.79966 * 10 9 7 12 12 C 1.46906 * 110.99880 * 185.35417 * 11 10 9 13 13 C 1.53044 * 113.14996 * 255.37162 * 12 11 10 14 14 S 1.81429 * 89.89049 * 211.85287 * 13 12 11 15 15 C 1.53045 * 113.14879 * 154.99969 * 12 11 10 16 16 C 1.53006 * 117.50031 * 129.25609 * 9 7 2 17 17 C 1.53004 * 117.50072 * 60.59547 * 9 7 2 18 18 H 0.96989 * 120.00304 * 5.00881 * 1 2 3 19 19 H 1.08997 * 109.47094 * 54.79989 * 10 9 7 20 20 H 1.09007 * 109.46789 * 174.80114 * 10 9 7 21 21 H 1.00898 * 111.00357 * 61.39799 * 11 10 9 22 22 H 1.09001 * 112.49629 * 25.21852 * 12 11 10 23 23 H 1.08996 * 113.14916 * 327.11842 * 13 12 11 24 24 H 1.09000 * 113.14453 * 96.59372 * 13 12 11 25 25 H 1.09003 * 113.15210 * 263.40469 * 15 12 11 26 26 H 1.08997 * 113.15098 * 32.85279 * 15 12 11 27 27 H 1.08996 * 117.49453 * 359.97438 * 16 9 7 28 28 H 1.08997 * 117.50127 * 145.02512 * 16 9 7 29 29 H 1.08996 * 117.50252 * 214.98083 * 17 9 7 30 30 H 1.09000 * 117.49622 * 359.97438 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0817 -1.1957 -0.0786 9 6 1.2547 -2.4970 0.1052 10 6 0.9188 -2.9528 1.5266 11 7 2.1613 -3.2475 2.2527 12 6 1.8750 -3.8091 3.5796 13 6 2.0950 -2.8086 4.7167 14 16 2.5838 -4.1684 5.8139 15 6 3.0135 -4.6741 4.1253 16 6 1.5732 -3.5803 -0.9274 17 6 0.2454 -2.8219 -0.9979 18 1 -0.4850 0.8367 -0.0733 19 1 0.3752 -2.1616 2.0429 20 1 0.3013 -3.8500 1.4840 21 1 2.7414 -2.4252 2.3256 22 1 0.9037 -4.3018 3.6233 23 1 2.9042 -2.1059 4.5184 24 1 1.1782 -2.3112 5.0330 25 1 2.8661 -5.7392 3.9464 26 1 3.9998 -4.3314 3.8126 27 1 2.3248 -3.3503 -1.6825 28 1 1.5430 -4.6176 -0.5942 29 1 -0.6577 -3.3606 -0.7111 30 1 0.1234 -2.0929 -1.7990 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308082843.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:10 Heat of formation + Delta-G solvation = 26.929545 kcal Electronic energy + Delta-G solvation = -12362.726514 eV Core-core repulsion = 10284.782455 eV Total energy + Delta-G solvation = -2077.944059 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.18086 -37.66030 -33.95405 -32.82733 -27.66753 -27.17136 -25.90003 -22.80493 -22.04547 -20.87724 -17.97360 -17.47495 -16.65405 -16.58026 -16.13919 -15.64909 -14.70261 -14.48093 -14.08242 -13.85249 -13.40777 -13.15157 -12.87971 -12.84746 -12.66087 -12.28580 -11.95225 -11.86365 -11.50697 -11.07232 -10.78174 -10.35090 -9.89069 -9.20446 -8.83864 -8.05159 -6.17379 0.82338 0.97537 1.40951 1.46120 1.55066 2.45033 3.20890 3.23291 3.54627 3.77849 3.93750 4.06794 4.39646 4.41939 4.49123 4.69028 4.73268 4.78875 4.82827 5.02591 5.10702 5.13968 5.36573 5.68157 5.75468 5.84817 6.27504 6.50959 6.57500 6.92578 7.51306 9.01220 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.031542 B = 0.008852 C = 0.007515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.493563 B = 3162.358452 C = 3724.930116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.026 3.974 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.500 4.500 8 H 0.054 0.946 9 C 0.023 3.977 10 C 0.119 3.881 11 N -0.658 5.658 12 C 0.089 3.911 13 C -0.102 4.102 14 S -0.337 6.337 15 C -0.051 4.051 16 C -0.179 4.179 17 C -0.164 4.164 18 H 0.257 0.743 19 H 0.008 0.992 20 H 0.055 0.945 21 H 0.349 0.651 22 H 0.113 0.887 23 H 0.109 0.891 24 H 0.091 0.909 25 H 0.107 0.893 26 H 0.112 0.888 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.517 -6.126 6.189 9.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.175 4.175 3 Si 0.770 3.230 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.538 4.538 8 H 0.073 0.927 9 C 0.022 3.978 10 C -0.011 4.011 11 N -0.289 5.289 12 C -0.024 4.024 13 C -0.252 4.252 14 S -0.114 6.114 15 C -0.200 4.200 16 C -0.216 4.216 17 C -0.203 4.203 18 H 0.066 0.934 19 H 0.026 0.974 20 H 0.073 0.927 21 H 0.170 0.830 22 H 0.131 0.869 23 H 0.128 0.872 24 H 0.110 0.890 25 H 0.126 0.874 26 H 0.130 0.870 27 H 0.087 0.913 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.488 -7.034 7.335 10.745 hybrid contribution -0.181 2.324 -0.729 2.442 sum 3.306 -4.711 6.606 8.762 Atomic orbital electron populations 1.70110 1.06981 1.26960 1.50495 1.25627 0.95442 1.01624 0.94759 0.85734 0.79487 0.80573 0.77208 1.18958 1.21407 1.21008 1.20741 0.92720 0.90027 1.50328 0.92740 1.18933 0.98310 0.92957 0.87607 1.21259 0.89674 0.96312 0.93824 1.60330 1.17618 1.36348 1.14565 1.23007 0.98831 0.93641 0.86891 1.25338 1.05249 0.99850 0.94785 1.88883 1.82637 1.24568 1.15263 1.24526 1.02964 1.05094 0.87449 1.22860 0.98225 0.96508 1.04014 1.22413 0.92132 1.01983 1.03724 0.93368 0.97381 0.92697 0.83038 0.86937 0.87235 0.89005 0.87409 0.86953 0.91252 0.89388 0.91164 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.87 12.65 21.45 0.27 -49.60 16 2 C 0.03 1.33 5.43 84.65 0.46 1.79 16 3 Si 0.94 41.61 29.54 68.60 2.03 43.64 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.50 -25.50 8.33 25.60 0.21 -25.29 16 8 H 0.05 2.79 7.82 -2.91 -0.02 2.77 16 9 C 0.02 1.04 1.65 -52.93 -0.09 0.95 16 10 C 0.12 4.77 5.44 86.31 0.47 5.24 16 11 N -0.66 -22.00 6.55 -526.57 -3.45 -25.44 16 12 C 0.09 2.43 3.83 44.94 0.17 2.60 16 13 C -0.10 -2.69 7.54 72.00 0.54 -2.15 16 14 S -0.34 -9.00 24.80 -56.49 -1.40 -10.40 16 15 C -0.05 -1.22 7.76 72.00 0.56 -0.66 16 16 C -0.18 -7.42 9.96 30.62 0.30 -7.12 16 17 C -0.16 -7.53 9.14 30.62 0.28 -7.25 16 18 H 0.26 13.64 8.32 -92.72 -0.77 12.87 16 19 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 20 H 0.05 2.05 7.96 -2.38 -0.02 2.03 16 21 H 0.35 12.28 7.80 -89.70 -0.70 11.58 16 22 H 0.11 3.03 7.78 -2.39 -0.02 3.01 16 23 H 0.11 2.80 7.88 -2.39 -0.02 2.78 16 24 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 28 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 29 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 30 H 0.05 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -54.38 266.62 0.78 -53.60 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.42 Total: 20.08 kcal Atomic # 6 Polarization: -34.80 SS G_CDS: 2.91 Total: -31.88 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -3.18 Total: -75.04 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.40 Total: -10.40 kcal Total: -54.38 0.78 -53.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308082843.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.533 kcal (2) G-P(sol) polarization free energy of solvation -54.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds