Wall clock time and date at job start Mon Mar 30 2020 02:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00370 * 2 1 4 4 H 1.48492 * 109.47593 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47005 * 300.00511 * 3 2 1 6 6 H 1.48499 * 109.47169 * 59.99851 * 3 2 1 7 7 C 1.37880 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00479 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99806 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46964 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46658 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00251 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99662 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99897 * 180.02562 * 13 11 10 15 15 H 1.08999 * 115.55169 * 9.33544 * 14 13 11 16 16 C 1.52997 * 117.49850 * 223.62089 * 14 13 11 17 17 C 1.53000 * 60.00347 * 252.51172 * 16 14 13 18 18 H 1.08990 * 117.49990 * 252.50929 * 17 16 14 19 19 C 1.52998 * 117.49463 * 107.48750 * 17 16 14 20 20 O 1.42902 * 109.46869 * 116.38163 * 19 17 16 21 21 H 0.96997 * 120.00131 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.46717 * 60.00336 * 9 7 2 23 23 H 1.08999 * 109.46646 * 300.00375 * 9 7 2 24 24 H 1.09005 * 109.47284 * 60.00050 * 10 9 7 25 25 H 1.08998 * 109.47220 * 300.00290 * 10 9 7 26 26 H 0.97007 * 120.00102 * 0.02562 * 13 11 10 27 27 H 1.09002 * 117.49910 * 145.02312 * 16 14 13 28 28 H 1.09002 * 117.49884 * 0.02562 * 16 14 13 29 29 H 1.09000 * 109.47131 * 236.37968 * 19 17 16 30 30 H 1.09001 * 109.47579 * 356.38538 * 19 17 16 31 31 H 0.96699 * 114.00141 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9672 0.0001 12 8 0.2789 -4.9672 0.0000 13 7 2.1656 -6.1344 -0.0003 14 6 1.4331 -7.4031 -0.0003 15 1 0.3576 -7.3250 -0.1594 16 6 1.9310 -8.5063 0.9357 17 6 2.1449 -8.6298 -0.5743 18 1 1.5377 -9.3589 -1.1106 19 6 3.5672 -8.4376 -1.1042 20 8 4.0215 -9.6539 -1.7013 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5570 0.8897 24 1 2.8720 -3.6044 0.8895 25 1 2.8720 -3.6043 -0.8905 26 1 3.1357 -6.1344 -0.0006 27 1 1.1830 -9.1541 1.3927 28 1 2.8033 -8.2879 1.5517 29 1 3.5728 -7.6426 -1.8500 30 1 4.2285 -8.1680 -0.2808 31 1 4.9184 -9.6052 -2.0593 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308187165.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:41 Heat of formation + Delta-G solvation = -77.915870 kcal Electronic energy + Delta-G solvation = -13668.539802 eV Core-core repulsion = 11143.296434 eV Total energy + Delta-G solvation = -2525.243368 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.60777 -37.90436 -36.11705 -33.47139 -32.61016 -30.81988 -27.15587 -25.81140 -22.66152 -21.58032 -20.25737 -19.81790 -17.75825 -16.89414 -16.22696 -15.66534 -15.13361 -14.82566 -14.49064 -14.18830 -13.69998 -13.20798 -12.55600 -12.33577 -12.15049 -11.32709 -11.23105 -11.18122 -10.94798 -10.92273 -10.59180 -9.98721 -9.91653 -9.69380 -9.21948 -9.04471 -8.61305 -8.33371 -5.97418 -4.01973 3.05212 3.31753 3.32810 3.39443 3.42561 3.69681 3.95632 4.46338 4.71224 4.76785 4.98085 5.03200 5.28583 5.36801 5.37718 5.46744 5.65591 5.94456 5.99225 6.18306 6.19774 6.67789 6.85481 7.34927 7.72950 7.79365 7.84150 8.05481 8.36636 8.71062 9.06657 9.61774 11.13602 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.059167 B = 0.005107 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.126273 B = 5481.788182 C = 5792.213335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.514 3.486 12 O -0.530 6.530 13 N -0.718 5.718 14 C 0.099 3.901 15 H 0.140 0.860 16 C -0.190 4.190 17 C -0.167 4.167 18 H 0.118 0.882 19 C 0.105 3.895 20 O -0.572 6.572 21 H 0.260 0.740 22 H 0.024 0.976 23 H 0.024 0.976 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.397 0.603 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.829 -15.814 -0.773 18.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.169 4.169 11 C 0.303 3.697 12 O -0.404 6.404 13 N -0.369 5.369 14 C -0.008 4.008 15 H 0.157 0.843 16 C -0.229 4.229 17 C -0.187 4.187 18 H 0.136 0.864 19 C 0.027 3.973 20 O -0.378 6.378 21 H 0.070 0.930 22 H 0.043 0.957 23 H 0.043 0.957 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.231 0.769 27 H 0.120 0.880 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 7.168 -15.835 -0.591 17.392 hybrid contribution 1.519 1.018 -0.112 1.832 sum 8.687 -14.817 -0.703 17.190 Atomic orbital electron populations 1.70005 1.06068 1.26508 1.50215 1.25026 0.94819 0.99249 0.95275 0.86532 0.79979 0.83820 0.77603 1.19764 1.21007 1.21001 1.21252 0.92958 0.90980 1.51374 0.92544 1.18918 0.93186 0.89352 0.98716 1.21885 1.00778 0.91711 1.02573 1.21632 0.88723 0.85419 0.73963 1.90667 1.14471 1.87460 1.47844 1.45677 1.09529 1.04616 1.77120 1.21669 0.97551 0.79753 1.01826 0.84255 1.23607 1.04099 1.02831 0.92329 1.22678 0.97086 1.02210 0.96732 0.86437 1.21631 0.93138 0.86392 0.96150 1.86469 1.36192 1.35701 1.79398 0.92975 0.95741 0.95749 0.90122 0.90133 0.76915 0.87962 0.88473 0.92771 0.93484 0.77323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.38 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 10 C -0.13 -2.59 5.64 -27.88 -0.16 -2.74 16 11 C 0.51 9.79 7.83 -10.98 -0.09 9.70 16 12 O -0.53 -12.44 15.55 5.56 0.09 -12.36 16 13 N -0.72 -9.99 5.34 -53.81 -0.29 -10.28 16 14 C 0.10 1.27 6.41 -67.93 -0.44 0.83 16 15 H 0.14 2.02 7.40 -51.93 -0.38 1.63 16 16 C -0.19 -1.96 10.10 -26.73 -0.27 -2.23 16 17 C -0.17 -1.78 6.06 -90.62 -0.55 -2.33 16 18 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 19 C 0.10 0.97 6.24 37.16 0.23 1.20 16 20 O -0.57 -5.43 13.66 -35.23 -0.48 -5.91 16 21 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 22 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 23 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 24 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 25 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 26 H 0.40 4.31 7.83 -40.82 -0.32 3.99 16 27 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.10 0.93 8.03 -51.93 -0.42 0.51 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.37 7.79 -51.93 -0.40 -0.03 16 31 H 0.38 1.81 9.12 45.56 0.42 2.23 16 LS Contribution 272.93 15.07 4.11 4.11 Total: -1.00 -34.70 272.93 -6.26 -40.95 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -3.61 Total: 1.93 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -1.80 Total: -8.34 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.45 Total: -36.93 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.39 Total: -18.27 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -34.70 -6.26 -40.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308187165.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.962 kcal (2) G-P(sol) polarization free energy of solvation -34.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds