Wall clock time and date at job start Mon Mar 30 2020 02:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00370 * 2 1 4 4 H 1.48492 * 109.47593 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47005 * 300.00511 * 3 2 1 6 6 H 1.48499 * 109.47169 * 59.99851 * 3 2 1 7 7 C 1.37880 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00479 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99806 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46964 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46658 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00251 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99662 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99897 * 180.02562 * 13 11 10 15 15 H 1.08999 * 115.55169 * 9.33544 * 14 13 11 16 16 C 1.52997 * 117.49850 * 223.62089 * 14 13 11 17 17 C 1.53000 * 60.00347 * 252.51172 * 16 14 13 18 18 H 1.08990 * 117.49990 * 252.50929 * 17 16 14 19 19 C 1.52998 * 117.49463 * 107.48750 * 17 16 14 20 20 O 1.42902 * 109.46869 * 116.38163 * 19 17 16 21 21 H 0.96997 * 120.00131 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.46717 * 60.00336 * 9 7 2 23 23 H 1.08999 * 109.46646 * 300.00375 * 9 7 2 24 24 H 1.09005 * 109.47284 * 60.00050 * 10 9 7 25 25 H 1.08998 * 109.47220 * 300.00290 * 10 9 7 26 26 H 0.97007 * 120.00102 * 0.02562 * 13 11 10 27 27 H 1.09002 * 117.49910 * 145.02312 * 16 14 13 28 28 H 1.09002 * 117.49884 * 0.02562 * 16 14 13 29 29 H 1.09000 * 109.47131 * 236.37968 * 19 17 16 30 30 H 1.09001 * 109.47579 * 356.38538 * 19 17 16 31 31 H 0.96699 * 114.00141 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9672 0.0001 12 8 0.2789 -4.9672 0.0000 13 7 2.1656 -6.1344 -0.0003 14 6 1.4331 -7.4031 -0.0003 15 1 0.3576 -7.3250 -0.1594 16 6 1.9310 -8.5063 0.9357 17 6 2.1449 -8.6298 -0.5743 18 1 1.5377 -9.3589 -1.1106 19 6 3.5672 -8.4376 -1.1042 20 8 4.0215 -9.6539 -1.7013 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5570 0.8897 24 1 2.8720 -3.6044 0.8895 25 1 2.8720 -3.6043 -0.8905 26 1 3.1357 -6.1344 -0.0006 27 1 1.1830 -9.1541 1.3927 28 1 2.8033 -8.2879 1.5517 29 1 3.5728 -7.6426 -1.8500 30 1 4.2285 -8.1680 -0.2808 31 1 4.9184 -9.6052 -2.0593 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308187165.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:41 Heat of formation + Delta-G solvation = -105.691814 kcal Electronic energy + Delta-G solvation = -13669.744257 eV Core-core repulsion = 11143.296434 eV Total energy + Delta-G solvation = -2526.447823 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.92810 -38.99821 -36.94716 -35.55664 -33.98084 -32.73110 -28.08285 -27.61904 -24.31154 -22.72839 -21.55416 -21.09799 -18.94907 -18.36274 -17.56322 -17.11965 -16.48642 -16.43386 -15.91100 -15.18190 -14.93306 -14.41624 -14.27198 -14.15980 -13.23358 -13.14595 -12.86093 -12.44478 -12.43165 -12.06443 -11.92585 -11.74086 -11.61724 -11.28101 -10.82796 -10.62052 -10.57204 -9.76578 -8.17548 -6.31599 1.43297 1.44580 1.57828 1.61679 2.10776 2.44516 2.78215 3.15888 3.20137 3.80636 3.91417 3.99680 4.24377 4.29556 4.47860 4.54282 4.56088 4.69440 4.83964 4.88001 5.10557 5.18466 5.47341 5.53957 5.63474 5.86146 6.17864 6.54863 6.87308 6.90417 7.30934 7.38988 8.95468 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.059167 B = 0.005107 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.126273 B = 5481.788182 C = 5792.213335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.007 4.007 3 Si 0.974 3.026 4 H -0.252 1.252 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.040 3.960 10 C -0.118 4.118 11 C 0.515 3.485 12 O -0.587 6.587 13 N -0.691 5.691 14 C 0.067 3.933 15 H 0.114 0.886 16 C -0.170 4.170 17 C -0.155 4.155 18 H 0.115 0.885 19 C 0.103 3.897 20 O -0.590 6.590 21 H 0.263 0.737 22 H -0.018 1.018 23 H -0.018 1.018 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.416 0.584 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.906 -16.386 -0.576 20.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.175 1.175 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.096 0.904 9 C 0.002 3.998 10 C -0.158 4.158 11 C 0.304 3.696 12 O -0.466 6.466 13 N -0.342 5.342 14 C -0.040 4.040 15 H 0.132 0.868 16 C -0.208 4.208 17 C -0.174 4.174 18 H 0.133 0.867 19 C 0.026 3.974 20 O -0.398 6.398 21 H 0.071 0.929 22 H 0.001 0.999 23 H 0.001 0.999 24 H 0.126 0.874 25 H 0.125 0.875 26 H 0.254 0.746 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 10.332 -16.465 -0.401 19.442 hybrid contribution 0.559 1.083 -0.191 1.233 sum 10.891 -15.382 -0.593 18.857 Atomic orbital electron populations 1.70184 1.08363 1.27743 1.51589 1.26141 0.95696 1.03974 0.94650 0.85265 0.79341 0.78075 0.77497 1.17502 1.20718 1.20693 1.21752 0.94058 0.91533 1.50619 0.90440 1.18716 0.93783 0.92540 0.94764 1.21649 0.99317 0.89706 1.05112 1.21400 0.87863 0.86592 0.73744 1.90654 1.16797 1.88246 1.50950 1.45262 1.10354 1.03662 1.74959 1.21669 0.96694 0.79851 1.05766 0.86804 1.23707 1.04433 1.00308 0.92356 1.22715 0.97805 0.99722 0.97197 0.86728 1.21647 0.92401 0.86449 0.96920 1.86412 1.38060 1.35722 1.79653 0.92877 0.99927 0.99915 0.87448 0.87459 0.74628 0.86933 0.86854 0.92681 0.91395 0.74958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.60 13.29 21.45 0.28 -59.32 16 2 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 3 Si 0.97 44.02 29.54 68.60 2.03 46.04 16 4 H -0.25 -10.41 7.11 99.48 0.71 -9.71 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.54 -30.59 9.11 25.60 0.23 -30.36 16 8 H 0.08 3.96 7.74 -2.91 -0.02 3.93 16 9 C 0.04 2.20 4.26 29.85 0.13 2.33 16 10 C -0.12 -4.62 5.64 29.85 0.17 -4.46 16 11 C 0.51 19.70 7.83 87.66 0.69 20.39 16 12 O -0.59 -28.95 15.55 -3.01 -0.05 -29.00 16 13 N -0.69 -18.20 5.34 -442.53 -2.36 -20.56 16 14 C 0.07 1.65 6.41 44.99 0.29 1.93 16 15 H 0.11 3.44 7.40 -2.39 -0.02 3.42 16 16 C -0.17 -3.07 10.10 30.59 0.31 -2.76 16 17 C -0.15 -2.97 6.06 -10.79 -0.07 -3.04 16 18 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 19 C 0.10 1.60 6.24 71.98 0.45 2.05 16 20 O -0.59 -9.47 13.66 -148.98 -2.03 -11.50 16 21 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 22 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 23 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 24 H 0.11 3.63 8.14 -2.38 -0.02 3.61 16 25 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 26 H 0.42 7.72 7.83 -92.70 -0.73 6.99 16 27 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.11 1.73 8.03 -2.39 -0.02 1.71 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.78 7.79 -2.39 -0.02 0.76 16 31 H 0.40 2.59 9.12 -74.06 -0.68 1.92 16 Total: -1.00 -78.36 272.93 0.26 -78.11 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -0.26 Total: 10.11 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 2.66 Total: -13.88 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -2.08 Total: -79.88 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -2.08 Total: -40.50 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -78.36 0.26 -78.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308187165.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.585 kcal (2) G-P(sol) polarization free energy of solvation -78.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds