Wall clock time and date at job start Mon Mar 30 2020 02:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47057 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47244 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00033 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99618 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99673 * 179.97438 * 13 11 10 15 15 H 1.09005 * 115.55407 * 9.33364 * 14 13 11 16 16 C 1.53002 * 117.50117 * 223.62358 * 14 13 11 17 17 C 1.53002 * 117.49752 * 155.00027 * 14 13 11 18 18 H 1.08998 * 117.49924 * 359.97438 * 17 14 13 19 19 C 1.53001 * 117.49902 * 214.97809 * 17 14 13 20 20 O 1.42902 * 109.47161 * 175.00186 * 19 17 14 21 21 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 23 23 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 24 24 H 1.09002 * 109.46997 * 300.00438 * 10 9 7 25 25 H 1.08998 * 109.47088 * 60.00229 * 10 9 7 26 26 H 0.96997 * 120.00587 * 0.02562 * 13 11 10 27 27 H 1.09004 * 117.49626 * 0.02562 * 16 14 13 28 28 H 1.09007 * 117.49941 * 145.02275 * 16 14 13 29 29 H 1.08994 * 109.47587 * 295.00367 * 19 17 14 30 30 H 1.09003 * 109.46782 * 55.00200 * 19 17 14 31 31 H 0.96698 * 113.99838 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4918 -4.9672 0.0020 12 8 0.2791 -4.9672 0.0020 13 7 2.1658 -6.1343 0.0014 14 6 1.4333 -7.4030 0.0024 15 1 0.3576 -7.3251 -0.1558 16 6 1.9320 -8.5059 0.9383 17 6 2.1447 -8.6299 -0.5718 18 1 3.1574 -8.4930 -0.9508 19 6 1.2916 -9.6537 -1.3236 20 8 2.1380 -10.6603 -1.8825 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6248 -2.5563 0.8920 23 1 0.6242 -2.5575 -0.8880 24 1 2.8714 -3.6046 -0.8890 25 1 2.8727 -3.6039 0.8909 26 1 3.1358 -6.1343 0.0009 27 1 2.8049 -8.2874 1.5536 28 1 1.1844 -9.1537 1.3962 29 1 0.5853 -10.1150 -0.6334 30 1 0.7447 -9.1538 -2.1230 31 1 1.6635 -11.3441 -2.3749 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308187166.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:43 Heat of formation + Delta-G solvation = -82.950200 kcal Electronic energy + Delta-G solvation = -13554.895573 eV Core-core repulsion = 11029.433900 eV Total energy + Delta-G solvation = -2525.461673 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.59799 -37.97645 -36.19881 -33.78475 -32.78581 -30.70003 -27.03982 -25.28226 -22.68070 -21.38727 -20.97411 -19.83730 -17.77100 -17.07121 -16.22300 -16.06428 -15.04433 -14.94984 -14.56806 -13.78001 -13.64217 -13.15477 -12.66758 -12.55204 -12.15702 -11.52061 -11.44425 -11.26052 -10.89048 -10.81092 -10.13298 -10.12135 -10.02570 -9.94555 -9.34271 -8.67163 -8.53538 -8.28020 -6.31976 -4.02143 2.95722 3.20281 3.45491 3.49479 3.65041 3.70058 4.01397 4.57687 4.59736 4.75500 4.91965 5.02127 5.17352 5.33583 5.41733 5.45840 5.57811 5.87457 5.94992 6.08888 6.09734 6.62336 6.72413 7.32134 7.51132 7.56246 7.73601 8.19369 8.49652 8.62323 8.92119 9.71595 11.09087 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.080862 B = 0.004609 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.186170 B = 6073.755678 C = 6147.221669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 1.073 2.927 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.609 4.609 8 H 0.050 0.950 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.514 3.486 12 O -0.536 6.536 13 N -0.714 5.714 14 C 0.097 3.903 15 H 0.137 0.863 16 C -0.188 4.188 17 C -0.166 4.166 18 H 0.114 0.886 19 C 0.108 3.892 20 O -0.573 6.573 21 H 0.272 0.728 22 H 0.015 0.985 23 H 0.015 0.985 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.400 0.600 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.315 -18.329 -1.125 19.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.189 4.189 3 Si 0.902 3.098 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.647 4.647 8 H 0.068 0.932 9 C -0.014 4.014 10 C -0.163 4.163 11 C 0.303 3.697 12 O -0.411 6.411 13 N -0.365 5.365 14 C -0.010 4.010 15 H 0.154 0.846 16 C -0.226 4.226 17 C -0.186 4.186 18 H 0.132 0.868 19 C 0.030 3.970 20 O -0.379 6.379 21 H 0.083 0.917 22 H 0.033 0.967 23 H 0.033 0.967 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.235 0.765 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 4.678 -16.259 -0.833 16.939 hybrid contribution 0.347 -2.171 -0.245 2.212 sum 5.024 -18.430 -1.079 19.133 Atomic orbital electron populations 1.70709 1.06919 1.31012 1.46073 1.25860 0.96574 1.02708 0.93796 0.83493 0.74579 0.75068 0.76697 1.21476 1.21509 1.20994 1.22058 0.94214 0.91980 1.56488 0.93194 1.19029 0.93843 0.91156 0.97373 1.21740 1.00472 0.91167 1.02882 1.21616 0.88663 0.85514 0.73891 1.90650 1.14522 1.87582 1.48316 1.45639 1.09726 1.04429 1.76749 1.21598 0.97440 0.79918 1.02040 0.84585 1.23648 1.04021 1.02543 0.92422 1.22676 1.01752 0.98411 0.95768 0.86811 1.21663 0.91155 0.88170 0.96017 1.86466 1.37836 1.39813 1.73752 0.91710 0.96665 0.96689 0.89907 0.89909 0.76544 0.88292 0.88026 0.93190 0.92897 0.77305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.94 13.65 55.43 0.76 -28.18 16 2 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 3 Si 1.07 25.60 29.90 -169.99 -5.08 20.51 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.61 -17.62 9.11 -34.44 -0.31 -17.93 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.02 0.63 3.57 -27.89 -0.10 0.53 16 10 C -0.12 -2.52 5.64 -27.88 -0.16 -2.68 16 11 C 0.51 9.94 7.83 -10.98 -0.09 9.85 16 12 O -0.54 -12.53 15.55 5.56 0.09 -12.44 16 13 N -0.71 -10.23 5.57 -53.80 -0.30 -10.53 16 14 C 0.10 1.24 6.15 -67.93 -0.42 0.82 16 15 H 0.14 1.93 7.40 -51.93 -0.38 1.55 16 16 C -0.19 -1.91 10.10 -26.73 -0.27 -2.18 16 17 C -0.17 -1.76 5.98 -90.62 -0.54 -2.30 16 18 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 19 C 0.11 0.99 7.33 37.16 0.27 1.26 16 20 O -0.57 -5.36 13.66 -35.23 -0.48 -5.84 16 21 H 0.27 8.77 7.22 -40.82 -0.29 8.48 16 22 H 0.02 0.44 7.97 -51.93 -0.41 0.03 16 23 H 0.01 0.43 7.96 -51.93 -0.41 0.02 16 24 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 25 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 26 H 0.40 4.56 8.83 -40.82 -0.36 4.20 16 27 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.10 0.92 8.03 -51.92 -0.42 0.50 16 29 H 0.05 0.39 7.87 -51.93 -0.41 -0.02 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.38 1.71 9.12 45.56 0.42 2.13 16 LS Contribution 273.68 15.07 4.12 4.12 Total: -1.00 -35.55 273.68 -6.20 -41.75 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -3.59 Total: 2.89 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -1.71 Total: -12.28 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.46 Total: -38.71 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.39 Total: -18.29 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -5.08 Total: 20.51 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -35.55 -6.20 -41.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308187166.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.203 kcal (2) G-P(sol) polarization free energy of solvation -35.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds