Wall clock time and date at job start Mon Mar 30 2020 02:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47057 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47244 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00033 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99618 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99673 * 179.97438 * 13 11 10 15 15 H 1.09005 * 115.55407 * 9.33364 * 14 13 11 16 16 C 1.53002 * 117.50117 * 223.62358 * 14 13 11 17 17 C 1.53002 * 117.49752 * 155.00027 * 14 13 11 18 18 H 1.08998 * 117.49924 * 359.97438 * 17 14 13 19 19 C 1.53001 * 117.49902 * 214.97809 * 17 14 13 20 20 O 1.42902 * 109.47161 * 175.00186 * 19 17 14 21 21 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 23 23 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 24 24 H 1.09002 * 109.46997 * 300.00438 * 10 9 7 25 25 H 1.08998 * 109.47088 * 60.00229 * 10 9 7 26 26 H 0.96997 * 120.00587 * 0.02562 * 13 11 10 27 27 H 1.09004 * 117.49626 * 0.02562 * 16 14 13 28 28 H 1.09007 * 117.49941 * 145.02275 * 16 14 13 29 29 H 1.08994 * 109.47587 * 295.00367 * 19 17 14 30 30 H 1.09003 * 109.46782 * 55.00200 * 19 17 14 31 31 H 0.96698 * 113.99838 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4918 -4.9672 0.0020 12 8 0.2791 -4.9672 0.0020 13 7 2.1658 -6.1343 0.0014 14 6 1.4333 -7.4030 0.0024 15 1 0.3576 -7.3251 -0.1558 16 6 1.9320 -8.5059 0.9383 17 6 2.1447 -8.6299 -0.5718 18 1 3.1574 -8.4930 -0.9508 19 6 1.2916 -9.6537 -1.3236 20 8 2.1380 -10.6603 -1.8825 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6248 -2.5563 0.8920 23 1 0.6242 -2.5575 -0.8880 24 1 2.8714 -3.6046 -0.8890 25 1 2.8727 -3.6039 0.8909 26 1 3.1358 -6.1343 0.0009 27 1 2.8049 -8.2874 1.5536 28 1 1.1844 -9.1537 1.3962 29 1 0.5853 -10.1150 -0.6334 30 1 0.7447 -9.1538 -2.1230 31 1 1.6635 -11.3441 -2.3749 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308187166.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:43 Heat of formation + Delta-G solvation = -111.489298 kcal Electronic energy + Delta-G solvation = -13556.133121 eV Core-core repulsion = 11029.433900 eV Total energy + Delta-G solvation = -2526.699221 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.96604 -39.02509 -37.04996 -35.93814 -34.13061 -32.63684 -27.99213 -27.13584 -24.44193 -22.71322 -21.93541 -21.27431 -19.06239 -18.54184 -17.82539 -17.23536 -16.58116 -15.87750 -15.62435 -15.49092 -15.32009 -14.51160 -14.18926 -13.97866 -13.63010 -13.33966 -12.71282 -12.49699 -12.14833 -12.07937 -12.04481 -11.85831 -11.68126 -11.07095 -10.78457 -10.61978 -10.55684 -9.83303 -8.69823 -6.41709 1.50295 1.54726 1.65347 1.82224 2.00040 2.59900 2.75922 3.16866 3.25107 3.69158 3.87052 3.90648 4.17536 4.27055 4.31102 4.38590 4.47246 4.65430 4.75507 4.84181 4.95658 5.14389 5.27460 5.36229 5.46345 5.93159 6.17285 6.46455 6.52186 6.86881 7.20138 7.44347 8.70226 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.080862 B = 0.004609 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.186170 B = 6073.755678 C = 6147.221669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.046 4.046 3 Si 1.128 2.872 4 H -0.271 1.271 5 H -0.260 1.260 6 H -0.286 1.286 7 C -0.620 4.620 8 H 0.067 0.933 9 C 0.025 3.975 10 C -0.113 4.113 11 C 0.516 3.484 12 O -0.588 6.588 13 N -0.690 5.690 14 C 0.064 3.936 15 H 0.116 0.884 16 C -0.167 4.167 17 C -0.152 4.152 18 H 0.115 0.885 19 C 0.106 3.894 20 O -0.589 6.589 21 H 0.252 0.748 22 H -0.020 1.020 23 H -0.020 1.020 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.418 0.582 27 H 0.110 0.890 28 H 0.117 0.883 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.752 -19.322 -1.001 20.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.242 4.242 3 Si 0.948 3.052 4 H -0.197 1.197 5 H -0.185 1.185 6 H -0.212 1.212 7 C -0.657 4.657 8 H 0.086 0.914 9 C -0.013 4.013 10 C -0.153 4.153 11 C 0.305 3.695 12 O -0.468 6.468 13 N -0.341 5.341 14 C -0.042 4.042 15 H 0.134 0.866 16 C -0.206 4.206 17 C -0.172 4.172 18 H 0.133 0.867 19 C 0.028 3.972 20 O -0.398 6.398 21 H 0.061 0.939 22 H -0.001 1.001 23 H -0.002 1.002 24 H 0.123 0.877 25 H 0.124 0.876 26 H 0.255 0.745 27 H 0.129 0.871 28 H 0.135 0.865 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 7.169 -17.340 -0.721 18.777 hybrid contribution -0.404 -1.996 -0.302 2.059 sum 6.764 -19.336 -1.023 20.511 Atomic orbital electron populations 1.70872 1.08360 1.29767 1.48746 1.27679 0.96518 1.07458 0.92564 0.82831 0.74241 0.70314 0.77862 1.19689 1.18476 1.21202 1.22529 0.95233 0.92698 1.55258 0.91443 1.18879 0.94419 0.93862 0.94090 1.21523 0.99090 0.89595 1.05059 1.21299 0.87831 0.86555 0.73847 1.90636 1.16591 1.88299 1.51232 1.45292 1.10525 1.03725 1.74590 1.21675 0.96736 0.79811 1.05989 0.86567 1.23752 1.04316 1.00100 0.92396 1.22699 1.01428 0.96680 0.96380 0.86677 1.21666 0.91015 0.88162 0.96328 1.86402 1.38757 1.40452 1.74223 0.93896 1.00115 1.00184 0.87676 0.87592 0.74482 0.87122 0.86513 0.91586 0.93005 0.74942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.53 13.65 21.45 0.29 -61.23 16 2 C -0.05 -2.72 5.46 84.65 0.46 -2.25 16 3 Si 1.13 50.56 29.90 68.60 2.05 52.61 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 6 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 7 C -0.62 -35.87 9.11 25.60 0.23 -35.64 16 8 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 9 C 0.03 1.40 3.57 29.85 0.11 1.51 16 10 C -0.11 -4.57 5.64 29.85 0.17 -4.40 16 11 C 0.52 20.00 7.83 87.66 0.69 20.69 16 12 O -0.59 -28.67 15.55 -3.02 -0.05 -28.72 16 13 N -0.69 -18.85 5.57 -442.52 -2.46 -21.31 16 14 C 0.06 1.56 6.15 44.99 0.28 1.84 16 15 H 0.12 3.35 7.40 -2.38 -0.02 3.33 16 16 C -0.17 -2.96 10.10 30.60 0.31 -2.65 16 17 C -0.15 -2.87 5.98 -10.79 -0.06 -2.93 16 18 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 19 C 0.11 1.72 7.33 71.98 0.53 2.25 16 20 O -0.59 -9.58 13.66 -148.98 -2.04 -11.61 16 21 H 0.25 17.13 7.22 -92.71 -0.67 16.46 16 22 H -0.02 -1.21 7.97 -2.39 -0.02 -1.23 16 23 H -0.02 -1.25 7.96 -2.39 -0.02 -1.27 16 24 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 25 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 26 H 0.42 8.43 8.83 -92.71 -0.82 7.61 16 27 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.12 1.74 8.03 -2.38 -0.02 1.72 16 29 H 0.07 0.87 7.87 -2.39 -0.02 0.85 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.40 2.66 9.12 -74.06 -0.68 1.98 16 Total: -1.00 -79.38 273.68 0.25 -79.13 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -0.26 Total: 12.73 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 2.71 Total: -21.59 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -2.17 Total: -82.54 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -2.08 Total: -40.33 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 2.05 Total: 52.61 kcal Total: -79.38 0.25 -79.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308187166.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.356 kcal (2) G-P(sol) polarization free energy of solvation -79.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds