Wall clock time and date at job start Mon Mar 30 2020 02:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99403 * 2 1 4 4 H 1.48505 * 109.47357 * 239.99641 * 3 2 1 5 5 H 1.48495 * 109.47518 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47194 * 120.00109 * 3 2 1 7 7 C 1.38806 * 120.00349 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00094 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00049 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64836 * 14.61801 * 9 7 2 11 11 C 1.54911 * 104.83243 * 155.92556 * 10 9 7 12 12 C 1.55151 * 101.57855 * 37.01147 * 11 10 9 13 13 C 1.47483 * 125.59328 * 194.66279 * 9 7 2 14 14 H 1.09005 * 109.96039 * 300.31068 * 13 9 7 15 15 C 1.52998 * 110.03751 * 61.62762 * 13 9 7 16 16 C 1.52995 * 109.47382 * 182.84822 * 15 13 9 17 17 C 1.50700 * 109.47369 * 175.37888 * 16 15 13 18 18 O 1.20828 * 119.99712 * 359.97438 * 17 16 15 19 19 O 1.34223 * 120.00429 * 179.97438 * 17 16 15 20 20 H 0.96999 * 120.00646 * 0.02562 * 1 2 3 21 21 H 1.09004 * 110.36861 * 37.08466 * 10 9 7 22 22 H 1.09000 * 110.46149 * 274.81342 * 10 9 7 23 23 H 1.08994 * 111.00604 * 278.93529 * 11 10 9 24 24 H 1.09002 * 111.03122 * 155.10091 * 11 10 9 25 25 H 1.09001 * 110.72318 * 82.86449 * 12 11 10 26 26 H 1.09001 * 110.72042 * 205.95483 * 12 11 10 27 27 H 1.09004 * 109.46929 * 302.84964 * 15 13 9 28 28 H 1.09000 * 109.47160 * 62.84393 * 15 13 9 29 29 H 1.09001 * 109.47485 * 295.37903 * 16 15 13 30 30 H 1.09007 * 109.47315 * 55.37597 * 16 15 13 31 31 H 0.96697 * 117.00647 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1079 -2.5525 -0.3024 11 6 -0.2478 -4.0215 -0.7739 12 6 0.7643 -4.7441 0.1537 13 6 1.9015 -3.7116 0.3025 14 1 2.7028 -3.9387 -0.4008 15 6 2.4402 -3.7335 1.7344 16 6 3.0973 -5.0871 2.0114 17 6 3.7271 -5.0690 3.3804 18 8 3.6579 -4.0752 4.0641 19 8 4.3649 -6.1568 3.8402 20 1 -0.4851 0.8400 -0.0004 21 1 -0.4094 -1.8689 -1.0960 22 1 -0.7075 -2.3824 0.5919 23 1 0.0386 -4.1248 -1.8205 24 1 -1.2604 -4.3902 -0.6099 25 1 0.3127 -4.9626 1.1214 26 1 1.1317 -5.6577 -0.3138 27 1 3.1772 -2.9398 1.8575 28 1 1.6189 -3.5783 2.4340 29 1 2.3430 -5.8727 1.9689 30 1 3.8644 -5.2790 1.2611 31 1 4.7533 -6.0974 4.7238 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308401649.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:15 Heat of formation + Delta-G solvation = -82.665478 kcal Electronic energy + Delta-G solvation = -14475.740243 eV Core-core repulsion = 11950.290916 eV Total energy + Delta-G solvation = -2525.449326 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.06289 -37.67240 -36.00138 -33.15528 -32.11130 -29.34003 -27.55955 -24.67407 -23.51900 -20.87803 -20.09513 -19.13570 -17.89267 -16.85163 -16.08646 -15.87755 -15.03670 -14.28178 -13.85426 -13.56008 -13.06705 -12.27377 -12.13241 -11.91107 -11.72252 -11.40264 -11.08300 -10.83233 -10.77163 -10.65739 -10.38736 -10.07809 -9.97730 -9.77114 -9.63791 -9.59679 -8.52574 -6.73648 -5.69564 -3.04685 2.40136 3.22230 3.44258 3.48601 3.49619 4.53502 5.15654 5.32520 5.35987 5.51909 5.58449 5.66682 5.77447 5.87820 6.03058 6.25679 6.34240 6.38730 6.56667 6.60627 6.71338 6.73738 6.98583 7.20325 7.58329 7.67829 7.85193 8.05377 8.33962 9.25497 9.86354 10.55397 11.42813 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.028033 B = 0.009407 C = 0.007423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.591241 B = 2975.911505 C = 3771.258968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.227 4.227 8 H 0.074 0.926 9 N -0.595 5.595 10 C 0.173 3.827 11 C -0.149 4.149 12 C -0.128 4.128 13 C 0.161 3.839 14 H 0.035 0.965 15 C -0.116 4.116 16 C -0.110 4.110 17 C 0.473 3.527 18 O -0.511 6.511 19 O -0.525 6.525 20 H 0.253 0.747 21 H 0.070 0.930 22 H 0.024 0.976 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.116 -11.905 2.589 12.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.356 4.356 8 H 0.092 0.908 9 N -0.319 5.319 10 C 0.048 3.952 11 C -0.188 4.188 12 C -0.166 4.166 13 C 0.053 3.947 14 H 0.053 0.947 15 C -0.155 4.155 16 C -0.148 4.148 17 C 0.315 3.685 18 O -0.398 6.398 19 O -0.337 6.337 20 H 0.063 0.937 21 H 0.088 0.912 22 H 0.042 0.958 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 3.844 -11.386 2.359 12.246 hybrid contribution 0.741 0.940 0.794 1.436 sum 4.585 -10.446 3.154 11.835 Atomic orbital electron populations 1.69926 1.04982 1.25233 1.56391 1.24899 0.95669 0.97767 1.01821 0.86249 0.78582 0.83288 0.77956 1.21156 1.21616 1.21058 1.18933 0.90340 0.82350 1.43982 0.90824 1.44639 1.06195 1.01225 1.79824 1.21409 0.85062 0.90063 0.98665 1.23000 0.97484 0.99746 0.98566 1.22630 0.97256 0.97207 0.99494 1.21037 0.94088 0.87317 0.92257 0.94749 1.22045 1.00709 0.93017 0.99773 1.21536 1.00977 1.02670 0.89651 1.23977 0.74935 0.79689 0.89870 1.90743 1.56373 1.33899 1.58805 1.84572 1.67548 1.42565 1.39064 0.93683 0.91219 0.95808 0.92405 0.92493 0.92006 0.92387 0.90957 0.91601 0.88111 0.88084 0.73893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.34 10.57 55.49 0.59 -26.76 16 2 C 0.00 -0.14 5.47 -17.43 -0.10 -0.23 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.23 -6.39 9.77 -15.06 -0.15 -6.54 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.59 -15.16 3.14 -162.23 -0.51 -15.67 16 10 C 0.17 4.22 5.41 -2.53 -0.01 4.21 16 11 C -0.15 -2.80 7.09 -24.58 -0.17 -2.97 16 12 C -0.13 -2.16 5.58 -24.90 -0.14 -2.30 16 13 C 0.16 3.22 3.21 -66.70 -0.21 3.01 16 14 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 15 C -0.12 -2.18 4.04 -26.73 -0.11 -2.29 16 16 C -0.11 -1.53 5.56 -27.89 -0.16 -1.68 16 17 C 0.47 6.93 8.33 36.01 0.30 7.23 16 18 O -0.51 -9.56 16.68 -18.75 -0.31 -9.88 16 19 O -0.53 -5.83 13.42 -39.24 -0.53 -6.36 16 20 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 21 H 0.07 1.89 6.93 -51.93 -0.36 1.53 16 22 H 0.02 0.63 8.06 -51.93 -0.42 0.21 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.06 1.00 7.78 -51.93 -0.40 0.59 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 1.56 7.75 -51.93 -0.40 1.15 16 28 H 0.07 1.36 8.07 -51.93 -0.42 0.95 16 29 H 0.10 1.19 7.55 -51.93 -0.39 0.80 16 30 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.40 2.78 9.10 45.56 0.41 3.20 16 LS Contribution 261.26 15.07 3.94 3.94 Total: -1.00 -32.90 261.26 -6.24 -39.14 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -3.64 Total: -0.36 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -0.75 Total: -1.56 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.08 Total: -42.43 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.84 Total: -16.24 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.90 -6.24 -39.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308401649.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.526 kcal (2) G-P(sol) polarization free energy of solvation -32.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds