Wall clock time and date at job start Mon Mar 30 2020 02:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99403 * 2 1 4 4 H 1.48505 * 109.47357 * 239.99641 * 3 2 1 5 5 H 1.48495 * 109.47518 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47194 * 120.00109 * 3 2 1 7 7 C 1.38806 * 120.00349 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00094 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00049 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64836 * 14.61801 * 9 7 2 11 11 C 1.54911 * 104.83243 * 155.92556 * 10 9 7 12 12 C 1.55151 * 101.57855 * 37.01147 * 11 10 9 13 13 C 1.47483 * 125.59328 * 194.66279 * 9 7 2 14 14 H 1.09005 * 109.96039 * 300.31068 * 13 9 7 15 15 C 1.52998 * 110.03751 * 61.62762 * 13 9 7 16 16 C 1.52995 * 109.47382 * 182.84822 * 15 13 9 17 17 C 1.50700 * 109.47369 * 175.37888 * 16 15 13 18 18 O 1.20828 * 119.99712 * 359.97438 * 17 16 15 19 19 O 1.34223 * 120.00429 * 179.97438 * 17 16 15 20 20 H 0.96999 * 120.00646 * 0.02562 * 1 2 3 21 21 H 1.09004 * 110.36861 * 37.08466 * 10 9 7 22 22 H 1.09000 * 110.46149 * 274.81342 * 10 9 7 23 23 H 1.08994 * 111.00604 * 278.93529 * 11 10 9 24 24 H 1.09002 * 111.03122 * 155.10091 * 11 10 9 25 25 H 1.09001 * 110.72318 * 82.86449 * 12 11 10 26 26 H 1.09001 * 110.72042 * 205.95483 * 12 11 10 27 27 H 1.09004 * 109.46929 * 302.84964 * 15 13 9 28 28 H 1.09000 * 109.47160 * 62.84393 * 15 13 9 29 29 H 1.09001 * 109.47485 * 295.37903 * 16 15 13 30 30 H 1.09007 * 109.47315 * 55.37597 * 16 15 13 31 31 H 0.96697 * 117.00647 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1079 -2.5525 -0.3024 11 6 -0.2478 -4.0215 -0.7739 12 6 0.7643 -4.7441 0.1537 13 6 1.9015 -3.7116 0.3025 14 1 2.7028 -3.9387 -0.4008 15 6 2.4402 -3.7335 1.7344 16 6 3.0973 -5.0871 2.0114 17 6 3.7271 -5.0690 3.3804 18 8 3.6579 -4.0752 4.0641 19 8 4.3649 -6.1568 3.8402 20 1 -0.4851 0.8400 -0.0004 21 1 -0.4094 -1.8689 -1.0960 22 1 -0.7075 -2.3824 0.5919 23 1 0.0386 -4.1248 -1.8205 24 1 -1.2604 -4.3902 -0.6099 25 1 0.3127 -4.9626 1.1214 26 1 1.1317 -5.6577 -0.3138 27 1 3.1772 -2.9398 1.8575 28 1 1.6189 -3.5783 2.4340 29 1 2.3430 -5.8727 1.9689 30 1 3.8644 -5.2790 1.2611 31 1 4.7533 -6.0974 4.7238 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308401649.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:15 Heat of formation + Delta-G solvation = -105.755516 kcal Electronic energy + Delta-G solvation = -14476.741502 eV Core-core repulsion = 11950.290916 eV Total energy + Delta-G solvation = -2526.450586 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.22215 -39.32020 -37.09231 -34.91866 -33.79679 -31.22692 -29.06417 -26.58393 -25.07966 -22.12221 -21.83519 -20.69500 -19.09120 -18.65550 -17.39378 -17.13926 -16.77243 -16.09186 -15.64641 -14.98141 -14.34919 -13.90046 -13.67385 -13.50127 -13.43713 -12.90860 -12.70263 -12.53357 -12.41982 -12.16828 -12.03431 -11.75602 -11.55955 -11.53488 -11.30450 -11.21291 -10.64826 -8.78776 -7.85723 -5.21498 1.27538 1.42772 1.46586 1.52166 2.20977 2.50064 3.33292 3.66540 4.01709 4.11011 4.12709 4.33835 4.37337 4.50247 4.74905 4.80787 4.84564 4.94568 5.09150 5.22684 5.27058 5.44840 5.49653 5.63467 5.69402 5.72714 5.81307 6.27585 7.05941 7.12923 7.81958 8.48685 9.25596 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.028033 B = 0.009407 C = 0.007423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.591241 B = 2975.911505 C = 3771.258968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.971 3.029 4 H -0.274 1.274 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.234 4.234 8 H 0.075 0.925 9 N -0.620 5.620 10 C 0.174 3.826 11 C -0.135 4.135 12 C -0.115 4.115 13 C 0.150 3.850 14 H 0.047 0.953 15 C -0.104 4.104 16 C -0.101 4.101 17 C 0.481 3.519 18 O -0.563 6.563 19 O -0.509 6.509 20 H 0.246 0.754 21 H 0.030 0.970 22 H -0.011 1.011 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.105 0.895 27 H 0.034 0.966 28 H 0.037 0.963 29 H 0.135 0.865 30 H 0.129 0.871 31 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.236 -14.556 2.280 15.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.799 3.201 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.364 4.364 8 H 0.093 0.907 9 N -0.344 5.344 10 C 0.048 3.952 11 C -0.174 4.174 12 C -0.152 4.152 13 C 0.044 3.956 14 H 0.065 0.935 15 C -0.144 4.144 16 C -0.139 4.139 17 C 0.326 3.674 18 O -0.454 6.454 19 O -0.323 6.323 20 H 0.055 0.945 21 H 0.049 0.951 22 H 0.007 0.993 23 H 0.085 0.915 24 H 0.100 0.900 25 H 0.089 0.911 26 H 0.124 0.876 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.153 0.847 30 H 0.147 0.853 31 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 5.004 -14.104 2.059 15.106 hybrid contribution 0.449 1.678 0.919 1.965 sum 5.453 -12.426 2.978 13.893 Atomic orbital electron populations 1.70142 1.06289 1.25268 1.58139 1.25693 0.96545 1.01024 1.02688 0.85264 0.77319 0.79322 0.78150 1.19937 1.21935 1.20911 1.19281 0.90726 0.83891 1.42484 0.90713 1.44968 1.06664 1.02543 1.80227 1.21222 0.84441 0.93496 0.96004 1.22869 0.99793 0.95349 0.99377 1.22644 0.95102 0.97537 0.99956 1.21346 0.95698 0.85701 0.92819 0.93489 1.21744 0.99028 0.95219 0.98368 1.21425 1.02353 1.00035 0.90047 1.24018 0.74253 0.79421 0.89731 1.90746 1.58504 1.35940 1.60243 1.84504 1.66685 1.40484 1.40600 0.94467 0.95134 0.99330 0.91454 0.89998 0.91078 0.87612 0.94733 0.94405 0.84719 0.85273 0.71480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.04 10.57 21.65 0.23 -58.82 16 2 C -0.07 -3.92 5.47 84.86 0.46 -3.45 16 3 Si 0.97 47.59 29.55 68.60 2.03 49.62 16 4 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 6 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 7 C -0.23 -13.48 9.77 84.03 0.82 -12.66 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.62 -32.04 3.14 -667.18 -2.10 -34.13 16 10 C 0.17 8.68 5.41 86.86 0.47 9.15 16 11 C -0.14 -4.76 7.09 31.98 0.23 -4.53 16 12 C -0.11 -3.42 5.58 31.78 0.18 -3.24 16 13 C 0.15 5.77 3.21 45.25 0.15 5.92 16 14 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 15 C -0.10 -3.84 4.04 30.59 0.12 -3.71 16 16 C -0.10 -2.45 5.56 29.85 0.17 -2.29 16 17 C 0.48 12.96 8.33 71.24 0.59 13.55 16 18 O -0.56 -20.88 16.68 21.96 0.37 -20.51 16 19 O -0.51 -9.47 13.42 -51.35 -0.69 -10.15 16 20 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 21 H 0.03 1.73 6.93 -2.38 -0.02 1.71 16 22 H -0.01 -0.63 8.06 -2.39 -0.02 -0.65 16 23 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 24 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.07 2.01 7.78 -2.39 -0.02 1.99 16 26 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.03 1.51 7.75 -2.38 -0.02 1.49 16 28 H 0.04 1.58 8.07 -2.39 -0.02 1.56 16 29 H 0.13 2.44 7.55 -2.39 -0.02 2.43 16 30 H 0.13 2.50 8.14 -2.38 -0.02 2.48 16 31 H 0.42 4.46 9.10 -74.06 -0.67 3.79 16 Total: -1.00 -75.69 261.26 3.47 -72.22 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: 0.45 Total: 3.03 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 3.19 Total: -1.26 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -1.87 Total: -92.95 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.32 Total: -30.66 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -75.69 3.47 -72.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308401649.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.532 kcal (2) G-P(sol) polarization free energy of solvation -75.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds