Wall clock time and date at job start Mon Mar 30 2020 02:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00485 * 2 1 4 4 H 1.48500 * 109.47277 * 240.00366 * 3 2 1 5 5 H 1.48503 * 109.46777 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47212 * 120.00136 * 3 2 1 7 7 C 1.38816 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00212 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99488 * 359.97438 * 7 2 1 10 10 C 1.47416 * 125.65022 * 347.77222 * 9 7 2 11 11 C 1.54917 * 104.92825 * 204.05027 * 10 9 7 12 12 C 1.55271 * 101.52533 * 323.12533 * 11 10 9 13 13 C 1.47023 * 125.64560 * 167.74536 * 9 7 2 14 14 H 1.09001 * 109.88264 * 59.38482 * 13 9 7 15 15 C 1.53006 * 109.88223 * 298.37899 * 13 9 7 16 16 C 1.52997 * 109.47217 * 175.32256 * 15 13 9 17 17 C 1.50704 * 109.47363 * 184.93486 * 16 15 13 18 18 O 1.20831 * 119.99780 * 359.97438 * 17 16 15 19 19 O 1.34221 * 120.00154 * 179.97438 * 17 16 15 20 20 H 0.97001 * 119.99238 * 359.97438 * 1 2 3 21 21 H 1.08997 * 110.36783 * 322.94133 * 10 9 7 22 22 H 1.09002 * 110.36891 * 85.16062 * 10 9 7 23 23 H 1.08999 * 111.00419 * 81.11870 * 11 10 9 24 24 H 1.09000 * 111.00652 * 204.97000 * 11 10 9 25 25 H 1.09000 * 110.62725 * 277.00664 * 12 11 10 26 26 H 1.09005 * 110.75804 * 153.77802 * 12 11 10 27 27 H 1.08995 * 109.47193 * 295.32235 * 15 13 9 28 28 H 1.09004 * 109.47229 * 55.32297 * 15 13 9 29 29 H 1.08999 * 109.47199 * 304.93239 * 16 15 13 30 30 H 1.08996 * 109.47047 * 64.93242 * 16 15 13 31 31 H 0.96701 * 117.00340 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1179 -2.5467 0.2537 11 6 -0.2778 -4.0057 0.7496 12 6 0.7690 -4.7471 -0.1252 13 6 1.9079 -3.7139 -0.2547 14 1 2.6868 -3.9233 0.4785 15 6 2.4961 -3.7619 -1.6663 16 6 3.2014 -5.1028 -1.8796 17 6 3.8837 -5.1034 -3.2234 18 8 3.8126 -4.1312 -3.9374 19 8 4.5702 -6.1838 -3.6270 20 1 -0.4849 0.8401 0.0004 21 1 -0.4470 -1.8469 1.0217 22 1 -0.6841 -2.3943 -0.6652 23 1 -0.0301 -4.0880 1.8078 24 1 -1.2844 -4.3762 0.5556 25 1 0.3519 -4.9859 -1.1035 26 1 1.1216 -5.6490 0.3754 27 1 1.6952 -3.6523 -2.3975 28 1 3.2135 -2.9505 -1.7889 29 1 3.9435 -5.2518 -1.0953 30 1 2.4683 -5.9086 -1.8440 31 1 4.9904 -6.1374 -4.4967 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308401650.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:17 Heat of formation + Delta-G solvation = -82.212574 kcal Electronic energy + Delta-G solvation = -14476.106937 eV Core-core repulsion = 11950.677250 eV Total energy + Delta-G solvation = -2525.429687 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.06365 -37.69812 -36.00296 -33.15425 -32.11284 -29.35703 -27.55519 -24.67434 -23.52519 -20.86552 -20.10163 -19.15108 -17.89411 -16.86056 -16.08775 -15.87561 -15.04757 -14.26892 -13.85740 -13.56048 -13.06353 -12.27388 -12.14366 -11.90958 -11.71836 -11.40392 -11.08120 -10.83058 -10.77663 -10.66903 -10.38770 -10.08156 -9.97906 -9.76663 -9.63055 -9.58157 -8.53413 -6.75423 -5.68595 -3.03783 2.40006 3.22200 3.44291 3.48502 3.49617 4.53522 5.16129 5.32498 5.35993 5.52373 5.58810 5.65852 5.77937 5.87815 6.03339 6.25781 6.34263 6.38642 6.56718 6.60501 6.71787 6.73934 6.98359 7.20162 7.60611 7.66617 7.86120 8.05246 8.34604 9.25705 9.86957 10.54836 11.42927 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.028028 B = 0.009406 C = 0.007413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.765971 B = 2976.035723 C = 3776.407697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.226 4.226 8 H 0.075 0.925 9 N -0.595 5.595 10 C 0.170 3.830 11 C -0.149 4.149 12 C -0.128 4.128 13 C 0.162 3.838 14 H 0.034 0.966 15 C -0.117 4.117 16 C -0.110 4.110 17 C 0.473 3.527 18 O -0.511 6.511 19 O -0.525 6.525 20 H 0.253 0.747 21 H 0.075 0.925 22 H 0.022 0.978 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.294 -11.890 -2.316 12.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.093 0.907 9 N -0.319 5.319 10 C 0.045 3.955 11 C -0.188 4.188 12 C -0.166 4.166 13 C 0.054 3.946 14 H 0.052 0.948 15 C -0.157 4.157 16 C -0.148 4.148 17 C 0.315 3.685 18 O -0.398 6.398 19 O -0.337 6.337 20 H 0.063 0.937 21 H 0.093 0.907 22 H 0.040 0.960 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 4.008 -11.369 -2.103 12.237 hybrid contribution 0.775 0.919 -0.788 1.437 sum 4.783 -10.450 -2.891 11.851 Atomic orbital electron populations 1.69927 1.04959 1.25165 1.56607 1.24864 0.95682 0.97746 1.01966 0.86234 0.78553 0.83263 0.77945 1.21077 1.21612 1.21173 1.18947 0.90366 0.82365 1.43810 0.90743 1.44541 1.04976 1.00774 1.81565 1.21469 0.84806 0.90409 0.98772 1.23027 0.97299 0.99678 0.98805 1.22656 0.97107 0.97179 0.99632 1.20945 0.93903 0.87221 0.92547 0.94820 1.22080 1.00218 0.93261 1.00104 1.21534 1.00268 1.02687 0.90335 1.23982 0.75522 0.79355 0.89609 1.90743 1.58260 1.34908 1.55926 1.84573 1.64519 1.43516 1.41135 0.93699 0.90697 0.96027 0.92403 0.92479 0.91997 0.92352 0.91668 0.90906 0.88078 0.88129 0.73893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.34 10.48 55.49 0.58 -26.76 16 2 C -0.01 -0.17 5.47 -17.43 -0.10 -0.27 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.23 -6.35 9.73 -15.06 -0.15 -6.50 16 8 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.59 -15.16 3.13 -162.57 -0.51 -15.67 16 10 C 0.17 4.17 5.45 -2.53 -0.01 4.15 16 11 C -0.15 -2.81 7.10 -24.52 -0.17 -2.98 16 12 C -0.13 -2.16 5.68 -24.83 -0.14 -2.30 16 13 C 0.16 3.25 3.17 -66.95 -0.21 3.03 16 14 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 15 C -0.12 -2.20 4.06 -26.73 -0.11 -2.31 16 16 C -0.11 -1.53 5.58 -27.88 -0.16 -1.68 16 17 C 0.47 6.93 8.33 36.01 0.30 7.23 16 18 O -0.51 -9.56 16.68 -18.75 -0.31 -9.87 16 19 O -0.53 -5.83 13.42 -39.23 -0.53 -6.36 16 20 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 21 H 0.07 2.04 6.76 -51.93 -0.35 1.69 16 22 H 0.02 0.57 8.10 -51.93 -0.42 0.15 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 1.00 7.77 -51.93 -0.40 0.59 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 1.34 8.03 -51.93 -0.42 0.92 16 28 H 0.07 1.57 7.67 -51.93 -0.40 1.17 16 29 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.10 1.18 7.62 -51.93 -0.40 0.79 16 31 H 0.40 2.78 9.10 45.56 0.41 3.20 16 LS Contribution 261.06 15.07 3.93 3.93 Total: -1.00 -32.86 261.06 -6.23 -39.09 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -3.63 Total: -0.24 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -0.75 Total: -1.63 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.07 Total: -42.43 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.84 Total: -16.23 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.86 -6.23 -39.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308401650.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.121 kcal (2) G-P(sol) polarization free energy of solvation -32.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds