Wall clock time and date at job start Mon Mar 30 2020 02:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99854 * 2 1 4 4 H 1.48498 * 109.46888 * 270.00023 * 3 2 1 5 5 H 1.48499 * 109.47024 * 29.99863 * 3 2 1 6 6 H 1.48496 * 109.47022 * 150.00208 * 3 2 1 7 7 C 1.37881 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99874 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99694 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46855 * 180.02562 * 9 7 2 11 11 C 1.46498 * 120.00044 * 89.99567 * 10 9 7 12 12 C 1.53006 * 109.46687 * 90.00099 * 11 10 9 13 13 O 1.42895 * 109.47036 * 65.00210 * 12 11 10 14 14 C 1.34777 * 119.99483 * 269.99923 * 10 9 7 15 15 O 1.21280 * 120.00302 * 359.97438 * 14 10 9 16 16 C 1.50708 * 119.99671 * 179.97438 * 14 10 9 17 17 C 1.52998 * 117.50058 * 248.74744 * 16 14 10 18 18 C 1.52995 * 117.49877 * 180.08543 * 16 14 10 19 19 H 0.96995 * 120.00234 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47355 * 60.00218 * 9 7 2 21 21 H 1.08997 * 109.47085 * 299.99556 * 9 7 2 22 22 H 1.08992 * 109.47311 * 330.00343 * 11 10 9 23 23 H 1.08997 * 109.46828 * 209.99987 * 11 10 9 24 24 H 1.09001 * 109.47002 * 184.99687 * 12 11 10 25 25 H 1.08993 * 109.46955 * 305.00124 * 12 11 10 26 26 H 0.96700 * 113.99916 * 179.97438 * 13 12 11 27 27 H 1.09005 * 115.54862 * 34.41841 * 16 14 10 28 28 H 1.09004 * 117.49686 * 359.97438 * 17 16 14 29 29 H 1.08997 * 117.50069 * 145.01816 * 17 16 14 30 30 H 1.08999 * 117.49817 * 214.97649 * 18 16 14 31 31 H 1.08996 * 117.49823 * 359.97438 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2031 -3.6127 -0.0015 11 6 2.6782 -4.1699 1.2674 12 6 1.7472 -5.3014 1.7078 13 8 1.8267 -6.3762 0.7695 14 6 2.6419 -4.1243 -1.1686 15 8 2.2482 -3.6632 -2.2190 16 6 3.6217 -5.2694 -1.1684 17 6 5.0423 -4.9837 -1.6594 18 6 4.0833 -5.8044 -2.5254 19 1 -0.4850 0.8400 0.0004 20 1 0.6248 -2.5564 -0.8920 21 1 0.6242 -2.5575 0.8880 22 1 2.6854 -3.3887 2.0273 23 1 3.6878 -4.5598 1.1375 24 1 2.0480 -5.6566 2.6934 25 1 0.7225 -4.9324 1.7517 26 1 1.2613 -7.1301 0.9863 27 1 3.5045 -5.9882 -0.3574 28 1 5.2682 -3.9676 -1.9830 29 1 5.8597 -5.5148 -1.1718 30 1 4.2703 -6.8751 -2.6071 31 1 3.6780 -5.3284 -3.4183 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308402120.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:26 Heat of formation + Delta-G solvation = -61.363382 kcal Electronic energy + Delta-G solvation = -14649.938938 eV Core-core repulsion = 12125.413340 eV Total energy + Delta-G solvation = -2524.525598 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.25112 -36.83890 -35.67986 -34.39655 -32.55989 -29.05170 -27.26193 -24.15183 -22.64178 -22.07593 -21.44424 -18.08223 -17.38748 -16.69327 -16.39865 -15.23900 -14.88077 -14.36840 -14.05440 -13.85651 -13.29007 -12.77264 -12.20337 -11.91858 -11.70834 -11.29139 -11.17924 -11.12608 -10.84015 -10.57588 -10.19384 -10.06031 -9.99733 -9.77350 -9.57451 -8.74130 -8.41305 -7.57106 -6.01954 -4.06675 3.32408 3.36842 3.38824 3.42204 3.99450 4.41357 4.43533 4.47750 5.08816 5.28131 5.31942 5.33044 5.47449 5.50619 5.60732 5.81837 5.87680 6.05793 6.11887 6.21761 6.44094 6.54779 7.11621 7.50014 7.61579 7.78687 7.95913 8.27158 8.54035 8.94707 9.26237 9.59021 11.05950 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.031747 B = 0.009653 C = 0.008349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.772924 B = 2900.089325 C = 3352.733696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.246 3.754 10 N -0.593 5.593 11 C 0.114 3.886 12 C 0.055 3.945 13 O -0.567 6.567 14 C 0.544 3.456 15 O -0.548 6.548 16 C -0.182 4.182 17 C -0.164 4.164 18 C -0.156 4.156 19 H 0.263 0.737 20 H 0.042 0.958 21 H 0.029 0.971 22 H 0.094 0.906 23 H 0.074 0.926 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.371 0.629 27 H 0.137 0.863 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.119 -12.001 4.131 14.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.075 0.925 9 C 0.127 3.873 10 N -0.324 5.324 11 C -0.011 4.011 12 C -0.023 4.023 13 O -0.372 6.372 14 C 0.332 3.668 15 O -0.427 6.427 16 C -0.203 4.203 17 C -0.202 4.202 18 C -0.194 4.194 19 H 0.072 0.928 20 H 0.060 0.940 21 H 0.047 0.953 22 H 0.113 0.887 23 H 0.093 0.907 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.218 0.782 27 H 0.155 0.845 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.150 -11.186 3.310 13.187 hybrid contribution -0.038 0.594 0.520 0.791 sum 6.112 -10.592 3.830 12.815 Atomic orbital electron populations 1.69935 1.05987 1.26947 1.50596 1.24946 0.94883 0.99204 0.95127 0.86501 0.79650 0.83054 0.78234 1.20563 1.21161 1.19922 1.21465 0.93370 0.90716 1.50848 0.92466 1.19255 0.87581 0.82266 0.98233 1.47999 1.45729 1.34667 1.03995 1.21496 0.96879 0.94407 0.88298 1.22791 1.00435 0.88122 0.90999 1.86495 1.69127 1.29400 1.52196 1.19399 0.81293 0.82362 0.83778 1.90631 1.58803 1.61936 1.31298 1.22503 0.96003 1.01176 1.00611 1.22877 0.91660 1.01833 1.03831 1.22837 1.02606 0.99176 0.94738 0.92760 0.93956 0.95262 0.88739 0.90740 0.93336 0.93068 0.78215 0.84542 0.88646 0.88656 0.88822 0.87961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -15.21 9.39 -34.44 -0.32 -15.53 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.25 6.62 5.16 -5.19 -0.03 6.60 16 10 N -0.59 -13.25 2.44 -175.05 -0.43 -13.68 16 11 C 0.11 1.91 5.70 -4.04 -0.02 1.89 16 12 C 0.06 0.75 7.39 37.16 0.27 1.03 16 13 O -0.57 -7.52 10.60 -35.23 -0.37 -7.89 16 14 C 0.54 12.45 7.16 -10.98 -0.08 12.37 16 15 O -0.55 -14.98 15.84 5.56 0.09 -14.90 16 16 C -0.18 -3.18 4.43 -91.77 -0.41 -3.58 16 17 C -0.16 -2.48 10.24 -26.69 -0.27 -2.75 16 18 C -0.16 -2.42 10.05 -26.70 -0.27 -2.68 16 19 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 20 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 21 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 22 H 0.09 1.56 8.07 -51.93 -0.42 1.14 16 23 H 0.07 1.12 6.64 -51.93 -0.34 0.78 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.37 3.18 9.12 45.56 0.42 3.59 16 27 H 0.14 2.16 4.96 -51.93 -0.26 1.90 16 28 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 29 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.10 1.77 7.67 -51.93 -0.40 1.37 16 LS Contribution 266.77 15.07 4.02 4.02 Total: -1.00 -34.63 266.77 -5.67 -40.30 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -3.47 Total: 2.26 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.22 Total: -1.02 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.31 Total: -39.90 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.29 Total: -22.79 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -34.63 -5.67 -40.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308402120.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.067 kcal (2) G-P(sol) polarization free energy of solvation -34.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds