Wall clock time and date at job start Mon Mar 30 2020 02:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99854 * 2 1 4 4 H 1.48498 * 109.46888 * 270.00023 * 3 2 1 5 5 H 1.48499 * 109.47024 * 29.99863 * 3 2 1 6 6 H 1.48496 * 109.47022 * 150.00208 * 3 2 1 7 7 C 1.37881 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99874 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99694 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46855 * 180.02562 * 9 7 2 11 11 C 1.46498 * 120.00044 * 89.99567 * 10 9 7 12 12 C 1.53006 * 109.46687 * 90.00099 * 11 10 9 13 13 O 1.42895 * 109.47036 * 65.00210 * 12 11 10 14 14 C 1.34777 * 119.99483 * 269.99923 * 10 9 7 15 15 O 1.21280 * 120.00302 * 359.97438 * 14 10 9 16 16 C 1.50708 * 119.99671 * 179.97438 * 14 10 9 17 17 C 1.52998 * 117.50058 * 248.74744 * 16 14 10 18 18 C 1.52995 * 117.49877 * 180.08543 * 16 14 10 19 19 H 0.96995 * 120.00234 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47355 * 60.00218 * 9 7 2 21 21 H 1.08997 * 109.47085 * 299.99556 * 9 7 2 22 22 H 1.08992 * 109.47311 * 330.00343 * 11 10 9 23 23 H 1.08997 * 109.46828 * 209.99987 * 11 10 9 24 24 H 1.09001 * 109.47002 * 184.99687 * 12 11 10 25 25 H 1.08993 * 109.46955 * 305.00124 * 12 11 10 26 26 H 0.96700 * 113.99916 * 179.97438 * 13 12 11 27 27 H 1.09005 * 115.54862 * 34.41841 * 16 14 10 28 28 H 1.09004 * 117.49686 * 359.97438 * 17 16 14 29 29 H 1.08997 * 117.50069 * 145.01816 * 17 16 14 30 30 H 1.08999 * 117.49817 * 214.97649 * 18 16 14 31 31 H 1.08996 * 117.49823 * 359.97438 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2031 -3.6127 -0.0015 11 6 2.6782 -4.1699 1.2674 12 6 1.7472 -5.3014 1.7078 13 8 1.8267 -6.3762 0.7695 14 6 2.6419 -4.1243 -1.1686 15 8 2.2482 -3.6632 -2.2190 16 6 3.6217 -5.2694 -1.1684 17 6 5.0423 -4.9837 -1.6594 18 6 4.0833 -5.8044 -2.5254 19 1 -0.4850 0.8400 0.0004 20 1 0.6248 -2.5564 -0.8920 21 1 0.6242 -2.5575 0.8880 22 1 2.6854 -3.3887 2.0273 23 1 3.6878 -4.5598 1.1375 24 1 2.0480 -5.6566 2.6934 25 1 0.7225 -4.9324 1.7517 26 1 1.2613 -7.1301 0.9863 27 1 3.5045 -5.9882 -0.3574 28 1 5.2682 -3.9676 -1.9830 29 1 5.8597 -5.5148 -1.1718 30 1 4.2703 -6.8751 -2.6071 31 1 3.6780 -5.3284 -3.4183 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308402120.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:26 Heat of formation + Delta-G solvation = -87.666753 kcal Electronic energy + Delta-G solvation = -14651.079537 eV Core-core repulsion = 12125.413340 eV Total energy + Delta-G solvation = -2525.666198 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.91893 -38.06848 -37.11238 -36.10211 -34.67938 -30.67302 -29.10994 -26.05341 -24.10291 -23.28408 -23.07939 -19.68117 -18.69495 -18.53892 -18.08479 -17.06958 -16.34742 -16.22357 -15.38904 -15.31298 -14.78362 -14.31717 -14.17869 -13.49615 -13.34226 -13.11944 -12.87082 -12.59143 -12.46994 -12.30821 -12.19372 -11.71598 -11.34567 -11.28117 -10.83602 -10.67021 -10.55064 -9.42647 -8.24143 -6.39739 1.34820 1.38479 1.48209 1.74811 2.28399 2.44727 3.04687 3.05975 3.42112 3.75044 3.97679 4.09562 4.23628 4.32539 4.42247 4.62609 4.74643 4.79293 4.93782 4.94865 5.03053 5.19971 5.25137 5.30127 5.56391 5.86034 6.04608 6.68040 6.80588 6.99800 7.26607 7.52814 8.82873 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.031747 B = 0.009653 C = 0.008349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.772924 B = 2900.089325 C = 3352.733696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.969 3.031 4 H -0.282 1.282 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.052 0.948 9 C 0.262 3.738 10 N -0.597 5.597 11 C 0.103 3.897 12 C 0.066 3.934 13 O -0.582 6.582 14 C 0.529 3.471 15 O -0.611 6.611 16 C -0.191 4.191 17 C -0.146 4.146 18 C -0.151 4.151 19 H 0.268 0.732 20 H -0.010 1.010 21 H 0.025 0.975 22 H 0.094 0.906 23 H 0.099 0.901 24 H 0.094 0.906 25 H 0.031 0.969 26 H 0.394 0.606 27 H 0.161 0.839 28 H 0.073 0.927 29 H 0.140 0.860 30 H 0.134 0.866 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.213 -13.144 5.519 16.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.793 3.207 4 H -0.208 1.208 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.582 4.582 8 H 0.071 0.929 9 C 0.140 3.860 10 N -0.326 5.326 11 C -0.020 4.020 12 C -0.013 4.013 13 O -0.391 6.391 14 C 0.320 3.680 15 O -0.494 6.494 16 C -0.211 4.211 17 C -0.184 4.184 18 C -0.188 4.188 19 H 0.077 0.923 20 H 0.008 0.992 21 H 0.043 0.957 22 H 0.112 0.888 23 H 0.117 0.883 24 H 0.112 0.888 25 H 0.049 0.951 26 H 0.244 0.756 27 H 0.179 0.821 28 H 0.092 0.908 29 H 0.158 0.842 30 H 0.152 0.848 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.254 -12.379 4.752 15.618 hybrid contribution -0.728 0.897 0.080 1.159 sum 7.525 -11.481 4.831 14.553 Atomic orbital electron populations 1.70054 1.07600 1.28221 1.50922 1.25897 0.95850 1.03139 0.94333 0.85391 0.78873 0.78240 0.78162 1.20812 1.19681 1.18401 1.21707 0.93229 0.91943 1.51369 0.92935 1.18719 0.87999 0.83872 0.95387 1.48037 1.44660 1.33548 1.06379 1.21884 0.98946 0.95562 0.85601 1.22606 0.98440 0.87418 0.92830 1.86401 1.69916 1.30087 1.52656 1.20457 0.81523 0.83241 0.82814 1.90588 1.61116 1.64258 1.33423 1.22419 0.96105 0.99747 1.02875 1.23027 0.91385 1.01236 1.02730 1.22956 1.01892 1.01305 0.92636 0.92341 0.99151 0.95716 0.88819 0.88256 0.88825 0.95084 0.75617 0.82132 0.90839 0.84188 0.84816 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 2 C 0.01 0.40 5.46 84.66 0.46 0.86 16 3 Si 0.97 45.73 29.54 68.60 2.03 47.75 16 4 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 5 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.54 -32.41 9.39 25.60 0.24 -32.17 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.26 14.79 5.16 85.63 0.44 15.23 16 10 N -0.60 -27.20 2.44 -826.14 -2.02 -29.22 16 11 C 0.10 3.30 5.70 86.38 0.49 3.80 16 12 C 0.07 1.63 7.39 71.98 0.53 2.17 16 13 O -0.58 -13.86 10.60 -148.98 -1.58 -15.44 16 14 C 0.53 24.74 7.16 87.66 0.63 25.37 16 15 O -0.61 -35.21 15.84 -3.03 -0.05 -35.26 16 16 C -0.19 -6.32 4.43 -11.54 -0.05 -6.37 16 17 C -0.15 -4.01 10.24 30.62 0.31 -3.70 16 18 C -0.15 -4.35 10.05 30.62 0.31 -4.04 16 19 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 20 H -0.01 -0.64 7.42 -2.39 -0.02 -0.65 16 21 H 0.02 1.39 8.07 -2.39 -0.02 1.37 16 22 H 0.09 3.00 8.07 -2.39 -0.02 2.98 16 23 H 0.10 2.70 6.64 -2.39 -0.02 2.69 16 24 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.39 5.55 9.12 -74.06 -0.68 4.88 16 27 H 0.16 4.52 4.96 -2.38 -0.01 4.51 16 28 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 29 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 31 H 0.07 2.58 7.67 -2.39 -0.02 2.56 16 Total: -1.00 -79.32 266.77 2.49 -76.83 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.45 Total: 11.19 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 3.37 Total: 1.14 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -1.73 Total: -86.22 kcal Atomic # 8 Polarization: -49.07 SS G_CDS: -1.63 Total: -50.70 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -79.32 2.49 -76.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308402120.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.837 kcal (2) G-P(sol) polarization free energy of solvation -79.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds