Wall clock time and date at job start Mon Mar 30 2020 02:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47110 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47212 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47003 * 179.97438 * 11 10 9 13 13 C 1.46897 * 110.99772 * 179.97438 * 12 11 10 14 14 H 1.08991 * 110.36787 * 325.70611 * 13 12 11 15 15 C 1.54469 * 110.40637 * 203.36916 * 13 12 11 16 16 C 1.54376 * 103.04608 * 241.58790 * 15 13 12 17 17 O 1.45946 * 105.06799 * 17.82239 * 16 15 13 18 18 C 1.34858 * 108.42602 * 327.51607 * 17 16 15 19 19 O 1.20827 * 126.10382 * 213.43997 * 18 17 16 20 20 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 21 21 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 22 22 H 1.08991 * 109.47398 * 59.99511 * 9 7 2 23 23 H 1.09005 * 109.47000 * 299.99228 * 10 9 7 24 24 H 1.08996 * 109.47876 * 59.99314 * 10 9 7 25 25 H 1.08997 * 109.46714 * 299.99832 * 11 10 9 26 26 H 1.09000 * 109.47156 * 59.99729 * 11 10 9 27 27 H 1.00903 * 110.99871 * 56.05109 * 12 11 10 28 28 H 1.09001 * 110.70158 * 359.97277 * 15 13 12 29 29 H 1.09000 * 110.70291 * 123.02824 * 15 13 12 30 30 H 1.09004 * 110.31811 * 136.71551 * 16 15 13 31 31 H 1.08995 * 110.32460 * 258.81844 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4802 -4.9871 0.0025 12 7 2.4349 -6.1036 0.0031 13 6 1.7345 -7.3949 0.0043 14 1 0.8118 -7.3255 0.5802 15 6 2.6462 -8.5015 0.5792 16 6 2.7916 -9.4827 -0.6037 17 8 2.3916 -8.7191 -1.7814 18 6 1.4396 -7.8372 -1.4145 19 8 0.5134 -7.4651 -2.0953 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6241 -2.5567 0.8904 22 1 0.6247 -2.5570 -0.8895 23 1 2.8725 -3.6047 -0.8878 24 1 2.8714 -3.6039 0.8921 25 1 0.8533 -5.0441 0.8922 26 1 0.8539 -5.0455 -0.8877 27 1 3.0696 -6.0362 0.7845 28 1 3.6163 -8.0930 0.8624 29 1 2.1711 -8.9884 1.4309 30 1 3.8269 -9.8103 -0.6986 31 1 2.1346 -10.3414 -0.4663 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308428842.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:58 Heat of formation + Delta-G solvation = -96.202228 kcal Electronic energy + Delta-G solvation = -13883.627046 eV Core-core repulsion = 11357.590722 eV Total energy + Delta-G solvation = -2526.036324 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.01581 -37.51643 -36.54086 -34.05293 -32.25233 -30.31403 -27.37035 -25.16485 -22.91200 -22.44322 -20.88880 -20.40334 -17.33417 -17.07159 -16.73421 -16.51039 -15.35549 -14.86793 -14.10834 -13.93916 -13.69719 -13.63050 -12.94911 -12.60145 -12.35390 -12.07348 -11.59295 -11.38722 -10.81406 -10.77365 -10.68497 -10.35392 -10.10523 -9.85622 -9.75478 -8.52905 -8.50736 -8.28660 -6.32683 -4.01429 1.85258 3.13579 3.46235 3.49861 3.65511 3.89137 3.94085 4.08397 4.47786 4.57592 4.65736 4.98792 5.09927 5.27441 5.39791 5.44634 5.60578 5.71921 6.14872 6.43695 6.53761 6.56116 6.93609 6.99035 7.28887 7.39321 7.44418 7.57441 8.25766 8.50617 8.92379 9.71102 11.08119 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.066806 B = 0.005070 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.025877 B = 5521.618382 C = 5680.803950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 1.072 2.928 4 H -0.288 1.288 5 H -0.285 1.285 6 H -0.289 1.289 7 C -0.601 4.601 8 H 0.049 0.951 9 C 0.008 3.992 10 C -0.099 4.099 11 C 0.052 3.948 12 N -0.668 5.668 13 C 0.024 3.976 14 H 0.085 0.915 15 C -0.159 4.159 16 C 0.059 3.941 17 O -0.349 6.349 18 C 0.499 3.501 19 O -0.441 6.441 20 H 0.269 0.731 21 H 0.005 0.995 22 H 0.008 0.992 23 H 0.059 0.941 24 H 0.048 0.952 25 H 0.031 0.969 26 H 0.074 0.926 27 H 0.351 0.649 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.112 -19.011 3.523 20.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.190 4.190 3 Si 0.901 3.099 4 H -0.214 1.214 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.639 4.639 8 H 0.067 0.933 9 C -0.029 4.029 10 C -0.137 4.137 11 C -0.076 4.076 12 N -0.304 5.304 13 C -0.088 4.088 14 H 0.103 0.897 15 C -0.197 4.197 16 C -0.016 4.016 17 O -0.267 6.267 18 C 0.337 3.663 19 O -0.321 6.321 20 H 0.079 0.921 21 H 0.024 0.976 22 H 0.027 0.973 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.049 0.951 26 H 0.092 0.908 27 H 0.171 0.829 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.129 0.871 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.630 -17.218 2.300 18.261 hybrid contribution -0.104 -1.719 1.043 2.014 sum 5.526 -18.937 3.343 20.009 Atomic orbital electron populations 1.70748 1.06905 1.30612 1.46835 1.25873 0.96570 1.02778 0.93818 0.83500 0.74600 0.75045 0.76767 1.21434 1.21026 1.21513 1.22070 0.94314 0.91979 1.55556 0.93265 1.19200 0.94646 0.93105 0.95984 1.21487 0.98954 0.92151 1.01081 1.22349 0.94090 0.90437 1.00717 1.60406 1.20054 0.99397 1.50531 1.22835 0.98825 0.92554 0.94634 0.89696 1.23130 1.01851 0.96135 0.98600 1.23923 1.02710 0.93240 0.81752 1.87359 1.52486 1.50426 1.36430 1.23251 0.78495 0.76515 0.88064 1.90708 1.25462 1.55573 1.60308 0.92101 0.97648 0.97326 0.92242 0.93298 0.95071 0.90765 0.82859 0.88235 0.88631 0.87122 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.82 13.65 55.43 0.76 -28.06 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 3 Si 1.07 25.92 29.90 -169.99 -5.08 20.83 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.60 -17.66 9.11 -34.44 -0.31 -17.97 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.01 0.22 4.28 -27.89 -0.12 0.10 16 10 C -0.10 -2.09 5.41 -26.73 -0.14 -2.24 16 11 C 0.05 0.92 5.52 -3.82 -0.02 0.90 16 12 N -0.67 -9.45 6.32 -106.71 -0.67 -10.13 16 13 C 0.02 0.28 3.35 -67.69 -0.23 0.05 16 14 H 0.09 0.96 7.84 -51.93 -0.41 0.55 16 15 C -0.16 -1.10 6.84 -25.24 -0.17 -1.27 16 16 C 0.06 0.41 7.84 37.88 0.30 0.71 16 17 O -0.35 -4.53 11.18 -40.53 -0.45 -4.98 16 18 C 0.50 7.47 8.11 36.41 0.30 7.76 16 19 O -0.44 -8.32 18.00 -18.29 -0.33 -8.65 16 20 H 0.27 8.45 7.22 -40.82 -0.29 8.15 16 21 H 0.01 0.14 8.01 -51.92 -0.42 -0.27 16 22 H 0.01 0.24 8.01 -51.93 -0.42 -0.18 16 23 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.03 0.53 8.07 -51.93 -0.42 0.11 16 26 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 27 H 0.35 4.14 8.11 -39.29 -0.32 3.82 16 28 H 0.10 0.60 7.58 -51.93 -0.39 0.21 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 267.75 15.07 4.03 4.03 Total: -1.00 -34.87 267.75 -6.66 -41.52 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -4.40 Total: -2.91 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -0.50 Total: -11.66 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.08 Total: -38.18 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.78 Total: -13.63 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -5.08 Total: 20.83 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -34.87 -6.66 -41.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308428842.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.681 kcal (2) G-P(sol) polarization free energy of solvation -34.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds