Wall clock time and date at job start Mon Mar 30 2020 02:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47110 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47212 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47003 * 179.97438 * 11 10 9 13 13 C 1.46897 * 110.99772 * 179.97438 * 12 11 10 14 14 H 1.08991 * 110.36787 * 325.70611 * 13 12 11 15 15 C 1.54469 * 110.40637 * 203.36916 * 13 12 11 16 16 C 1.54376 * 103.04608 * 241.58790 * 15 13 12 17 17 O 1.45946 * 105.06799 * 17.82239 * 16 15 13 18 18 C 1.34858 * 108.42602 * 327.51607 * 17 16 15 19 19 O 1.20827 * 126.10382 * 213.43997 * 18 17 16 20 20 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 21 21 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 22 22 H 1.08991 * 109.47398 * 59.99511 * 9 7 2 23 23 H 1.09005 * 109.47000 * 299.99228 * 10 9 7 24 24 H 1.08996 * 109.47876 * 59.99314 * 10 9 7 25 25 H 1.08997 * 109.46714 * 299.99832 * 11 10 9 26 26 H 1.09000 * 109.47156 * 59.99729 * 11 10 9 27 27 H 1.00903 * 110.99871 * 56.05109 * 12 11 10 28 28 H 1.09001 * 110.70158 * 359.97277 * 15 13 12 29 29 H 1.09000 * 110.70291 * 123.02824 * 15 13 12 30 30 H 1.09004 * 110.31811 * 136.71551 * 16 15 13 31 31 H 1.08995 * 110.32460 * 258.81844 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4802 -4.9871 0.0025 12 7 2.4349 -6.1036 0.0031 13 6 1.7345 -7.3949 0.0043 14 1 0.8118 -7.3255 0.5802 15 6 2.6462 -8.5015 0.5792 16 6 2.7916 -9.4827 -0.6037 17 8 2.3916 -8.7191 -1.7814 18 6 1.4396 -7.8372 -1.4145 19 8 0.5134 -7.4651 -2.0953 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6241 -2.5567 0.8904 22 1 0.6247 -2.5570 -0.8895 23 1 2.8725 -3.6047 -0.8878 24 1 2.8714 -3.6039 0.8921 25 1 0.8533 -5.0441 0.8922 26 1 0.8539 -5.0455 -0.8877 27 1 3.0696 -6.0362 0.7845 28 1 3.6163 -8.0930 0.8624 29 1 2.1711 -8.9884 1.4309 30 1 3.8269 -9.8103 -0.6986 31 1 2.1346 -10.3414 -0.4663 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308428842.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:57 Heat of formation + Delta-G solvation = -121.643384 kcal Electronic energy + Delta-G solvation = -13884.730258 eV Core-core repulsion = 11357.590722 eV Total energy + Delta-G solvation = -2527.139535 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.98821 -38.66263 -37.89062 -35.93795 -33.76378 -31.64569 -28.62593 -26.86423 -24.50483 -23.53695 -22.17867 -21.85977 -18.94078 -18.26017 -18.09576 -17.53638 -16.63444 -16.04046 -15.65514 -15.54509 -14.97996 -14.88992 -14.67427 -13.78066 -13.70744 -13.28667 -13.08904 -12.68974 -12.52568 -12.27719 -11.96158 -11.79254 -11.73696 -11.50903 -11.42636 -10.69167 -10.56522 -9.68244 -8.71502 -6.42041 0.76207 1.52083 1.61856 1.79675 2.23349 2.56187 2.97714 3.04518 3.14194 3.31102 3.87171 4.00308 4.07921 4.13087 4.27843 4.49594 4.64090 4.71090 4.79675 4.84942 4.93674 4.99654 5.35943 5.47362 5.59611 5.71001 5.98183 6.16099 6.27026 6.28893 6.54832 7.41021 8.69314 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.066806 B = 0.005070 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.025877 B = 5521.618382 C = 5680.803950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.042 4.042 3 Si 1.123 2.877 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.619 4.619 8 H 0.053 0.947 9 C 0.007 3.993 10 C -0.085 4.085 11 C 0.068 3.932 12 N -0.672 5.672 13 C 0.023 3.977 14 H 0.092 0.908 15 C -0.143 4.143 16 C 0.050 3.950 17 O -0.371 6.371 18 C 0.492 3.508 19 O -0.499 6.499 20 H 0.254 0.746 21 H -0.007 1.007 22 H -0.019 1.019 23 H 0.048 0.952 24 H 0.064 0.936 25 H 0.040 0.960 26 H 0.045 0.955 27 H 0.368 0.632 28 H 0.114 0.886 29 H 0.130 0.870 30 H 0.138 0.862 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.225 -20.099 4.981 22.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.239 4.239 3 Si 0.944 3.056 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.657 4.657 8 H 0.072 0.928 9 C -0.031 4.031 10 C -0.123 4.123 11 C -0.061 4.061 12 N -0.309 5.309 13 C -0.089 4.089 14 H 0.109 0.891 15 C -0.181 4.181 16 C -0.023 4.023 17 O -0.289 6.289 18 C 0.333 3.667 19 O -0.382 6.382 20 H 0.063 0.937 21 H 0.011 0.989 22 H -0.001 1.001 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.192 0.808 28 H 0.133 0.867 29 H 0.148 0.852 30 H 0.156 0.844 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.786 -18.364 3.785 20.302 hybrid contribution -0.724 -1.495 0.584 1.761 sum 7.062 -19.859 4.369 21.525 Atomic orbital electron populations 1.70893 1.08054 1.29780 1.48930 1.27559 0.96601 1.07131 0.92596 0.82871 0.74253 0.70712 0.77784 1.19976 1.20663 1.18959 1.22524 0.94819 0.93325 1.55041 0.92827 1.19164 0.95192 0.94778 0.93972 1.21244 0.97751 0.92033 1.01230 1.21953 0.94038 0.90297 0.99850 1.60160 1.19637 0.99361 1.51753 1.22927 1.00361 0.92662 0.92939 0.89065 1.23204 1.01645 0.94032 0.99172 1.24444 1.04935 0.93199 0.79763 1.87320 1.51416 1.50480 1.39678 1.23900 0.77803 0.76150 0.88870 1.90665 1.28033 1.57410 1.62104 0.93690 0.98916 1.00108 0.93280 0.91710 0.94137 0.93588 0.80844 0.86730 0.85201 0.84381 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.32 13.65 21.45 0.29 -60.03 16 2 C -0.04 -2.52 5.46 84.65 0.46 -2.05 16 3 Si 1.12 51.40 29.90 68.60 2.05 53.45 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.62 -36.65 9.11 25.60 0.23 -36.41 16 8 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.01 0.36 4.28 29.85 0.13 0.48 16 10 C -0.08 -3.58 5.41 30.60 0.17 -3.42 16 11 C 0.07 2.39 5.52 86.31 0.48 2.87 16 12 N -0.67 -17.86 6.32 -491.52 -3.11 -20.97 16 13 C 0.02 0.49 3.35 44.93 0.15 0.64 16 14 H 0.09 1.89 7.84 -2.39 -0.02 1.87 16 15 C -0.14 -1.36 6.84 31.56 0.22 -1.14 16 16 C 0.05 0.52 7.84 72.45 0.57 1.09 16 17 O -0.37 -9.16 11.18 -58.08 -0.65 -9.81 16 18 C 0.49 14.67 8.11 71.50 0.58 15.25 16 19 O -0.50 -19.67 18.00 21.52 0.39 -19.29 16 20 H 0.25 16.59 7.22 -92.71 -0.67 15.92 16 21 H -0.01 -0.42 8.01 -2.38 -0.02 -0.44 16 22 H -0.02 -1.15 8.01 -2.39 -0.02 -1.17 16 23 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 24 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 25 H 0.04 1.35 8.07 -2.39 -0.02 1.33 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.37 7.56 8.11 -89.69 -0.73 6.83 16 28 H 0.11 0.81 7.58 -2.39 -0.02 0.80 16 29 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.14 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -78.80 267.75 2.45 -76.35 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: 0.49 Total: 2.98 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: 2.98 Total: -22.69 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -2.81 Total: -81.00 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.26 Total: -29.09 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 2.05 Total: 53.45 kcal Total: -78.80 2.45 -76.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308428842.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.292 kcal (2) G-P(sol) polarization free energy of solvation -78.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds