Wall clock time and date at job start Mon Mar 30 2020 02:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46894 * 109.47515 * 180.02562 * 11 10 9 13 13 C 1.46900 * 111.00559 * 180.02562 * 12 11 10 14 14 H 1.09003 * 110.32636 * 34.29949 * 13 12 11 15 15 C 1.54491 * 110.37017 * 156.54153 * 13 12 11 16 16 C 1.54577 * 102.14453 * 134.18585 * 15 13 12 17 17 O 1.45827 * 104.44241 * 333.14546 * 16 15 13 18 18 C 1.34316 * 109.92574 * 30.67961 * 17 16 15 19 19 O 1.20818 * 125.23542 * 159.14837 * 18 17 16 20 20 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 22 22 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 23 23 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 24 24 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 25 25 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 26 26 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 27 27 H 1.00905 * 110.99991 * 56.04757 * 12 11 10 28 28 H 1.09004 * 110.86279 * 252.34077 * 15 13 12 29 29 H 1.08992 * 110.87013 * 16.01986 * 15 13 12 30 30 H 1.08991 * 110.44195 * 91.89009 * 16 15 13 31 31 H 1.09001 * 110.43366 * 214.28961 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 7 2.4349 -6.1036 0.0024 13 6 1.7347 -7.3950 0.0023 14 1 0.8121 -7.3254 -0.5740 15 6 2.6465 -8.5011 -0.5739 16 6 2.4511 -9.6471 0.4448 17 8 2.0985 -8.9721 1.6884 18 6 1.4384 -7.8335 1.4200 19 8 0.7183 -7.2466 2.1925 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5575 -0.8880 22 1 0.6247 -2.5564 0.8919 23 1 2.8714 -3.6047 -0.8890 24 1 2.8726 -3.6039 0.8910 25 1 0.8541 -5.0447 0.8922 26 1 0.8534 -5.0451 -0.8877 27 1 3.0699 -6.0363 0.7837 28 1 2.3114 -8.8025 -1.5664 29 1 3.6862 -8.1747 -0.5963 30 1 1.6428 -10.3055 0.1266 31 1 3.3759 -10.2114 0.5648 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308428843.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:00 Heat of formation + Delta-G solvation = -95.431881 kcal Electronic energy + Delta-G solvation = -13862.523876 eV Core-core repulsion = 11336.520957 eV Total energy + Delta-G solvation = -2526.002919 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.12949 -37.58623 -36.39367 -33.76727 -32.17093 -30.42164 -27.46220 -25.41664 -22.63772 -22.47446 -21.14150 -20.08375 -17.58494 -17.09807 -16.44487 -16.24841 -15.04879 -14.76344 -14.36577 -14.08635 -13.76752 -13.74250 -12.50809 -12.42687 -12.25015 -11.83032 -11.49832 -11.41306 -10.88837 -10.79641 -10.64001 -10.57746 -10.51747 -9.70104 -9.34152 -9.05440 -8.39517 -8.31154 -5.96347 -3.98762 1.89316 3.04360 3.36154 3.40154 3.42817 3.71334 4.09501 4.13356 4.49393 4.61337 4.71166 4.99840 5.12871 5.39279 5.49542 5.62606 5.70482 5.89406 6.29485 6.50940 6.61409 6.68852 7.06953 7.12472 7.25788 7.38138 7.70757 7.85549 8.03587 8.46099 9.08031 9.65002 11.15098 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.071414 B = 0.005006 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.983311 B = 5592.126148 C = 5745.629922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.106 4.106 11 C 0.048 3.952 12 N -0.656 5.656 13 C 0.027 3.973 14 H 0.120 0.880 15 C -0.146 4.146 16 C 0.052 3.948 17 O -0.353 6.353 18 C 0.447 3.553 19 O -0.446 6.446 20 H 0.261 0.739 21 H 0.017 0.983 22 H 0.015 0.985 23 H 0.057 0.943 24 H 0.046 0.954 25 H 0.041 0.959 26 H 0.072 0.928 27 H 0.343 0.657 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.063 -18.859 -2.185 19.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.079 4.079 12 N -0.288 5.288 13 C -0.086 4.086 14 H 0.138 0.862 15 C -0.184 4.184 16 C -0.023 4.023 17 O -0.269 6.269 18 C 0.284 3.716 19 O -0.327 6.327 20 H 0.070 0.930 21 H 0.035 0.965 22 H 0.034 0.966 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.091 0.909 27 H 0.162 0.838 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.103 0.897 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.684 -18.531 -2.282 19.249 hybrid contribution 0.089 0.905 0.805 1.214 sum 4.773 -17.626 -1.477 18.321 Atomic orbital electron populations 1.69956 1.06070 1.26685 1.50836 1.25028 0.94844 0.99251 0.95352 0.86647 0.79564 0.83119 0.78599 1.20234 1.21303 1.20264 1.21206 0.92999 0.91035 1.50610 0.92713 1.19061 0.93987 0.91230 0.97276 1.21625 0.99261 0.92737 1.00788 1.22369 0.94239 0.90275 1.01061 1.60946 1.19196 0.99659 1.49029 1.23022 0.99804 0.92855 0.92883 0.86214 1.23031 1.02499 0.93331 0.99548 1.24155 1.02465 0.94887 0.80779 1.87067 1.68701 1.36539 1.34621 1.24496 0.76339 0.79635 0.91119 1.90754 1.30814 1.55421 1.55671 0.92964 0.96510 0.96625 0.92442 0.93539 0.94104 0.90938 0.83840 0.88217 0.88201 0.89743 0.87168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.23 5.41 -26.73 -0.14 -2.38 16 11 C 0.05 0.86 5.52 -3.83 -0.02 0.84 16 12 N -0.66 -9.25 6.25 -106.79 -0.67 -9.92 16 13 C 0.03 0.31 3.30 -67.77 -0.22 0.08 16 14 H 0.12 1.31 7.84 -51.93 -0.41 0.90 16 15 C -0.15 -1.06 6.95 -25.12 -0.17 -1.23 16 16 C 0.05 0.34 7.90 37.99 0.30 0.64 16 17 O -0.35 -4.23 11.06 -39.13 -0.43 -4.66 16 18 C 0.45 6.29 7.90 36.32 0.29 6.57 16 19 O -0.45 -8.20 17.33 -18.38 -0.32 -8.52 16 20 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 21 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.04 0.79 7.46 -51.93 -0.39 0.40 16 26 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 27 H 0.34 4.78 8.47 -39.29 -0.33 4.45 16 28 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.10 0.73 8.02 -51.93 -0.42 0.31 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 268.23 15.07 4.04 4.04 Total: -1.00 -33.49 268.23 -6.65 -40.14 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -4.46 Total: -2.45 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -0.53 Total: -8.86 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.07 Total: -36.69 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -0.75 Total: -13.19 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.49 -6.65 -40.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308428843.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.294 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds