Wall clock time and date at job start Mon Mar 30 2020 02:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46894 * 109.47515 * 180.02562 * 11 10 9 13 13 C 1.46900 * 111.00559 * 180.02562 * 12 11 10 14 14 H 1.09003 * 110.32636 * 34.29949 * 13 12 11 15 15 C 1.54491 * 110.37017 * 156.54153 * 13 12 11 16 16 C 1.54577 * 102.14453 * 134.18585 * 15 13 12 17 17 O 1.45827 * 104.44241 * 333.14546 * 16 15 13 18 18 C 1.34316 * 109.92574 * 30.67961 * 17 16 15 19 19 O 1.20818 * 125.23542 * 159.14837 * 18 17 16 20 20 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 22 22 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 23 23 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 24 24 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 25 25 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 26 26 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 27 27 H 1.00905 * 110.99991 * 56.04757 * 12 11 10 28 28 H 1.09004 * 110.86279 * 252.34077 * 15 13 12 29 29 H 1.08992 * 110.87013 * 16.01986 * 15 13 12 30 30 H 1.08991 * 110.44195 * 91.89009 * 16 15 13 31 31 H 1.09001 * 110.43366 * 214.28961 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 7 2.4349 -6.1036 0.0024 13 6 1.7347 -7.3950 0.0023 14 1 0.8121 -7.3254 -0.5740 15 6 2.6465 -8.5011 -0.5739 16 6 2.4511 -9.6471 0.4448 17 8 2.0985 -8.9721 1.6884 18 6 1.4384 -7.8335 1.4200 19 8 0.7183 -7.2466 2.1925 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5575 -0.8880 22 1 0.6247 -2.5564 0.8919 23 1 2.8714 -3.6047 -0.8890 24 1 2.8726 -3.6039 0.8910 25 1 0.8541 -5.0447 0.8922 26 1 0.8534 -5.0451 -0.8877 27 1 3.0699 -6.0363 0.7837 28 1 2.3114 -8.8025 -1.5664 29 1 3.6862 -8.1747 -0.5963 30 1 1.6428 -10.3055 0.1266 31 1 3.3759 -10.2114 0.5648 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308428843.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:59 Heat of formation + Delta-G solvation = -119.400048 kcal Electronic energy + Delta-G solvation = -13863.563214 eV Core-core repulsion = 11336.520957 eV Total energy + Delta-G solvation = -2527.042257 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.08641 -38.68594 -37.72430 -35.59954 -33.75048 -31.75645 -28.80562 -26.99734 -24.28576 -23.35900 -22.26780 -21.73793 -18.66969 -18.31851 -18.10158 -17.44709 -16.55689 -16.28217 -15.79776 -15.32380 -14.92979 -14.71906 -14.29243 -13.86278 -13.48803 -13.11987 -13.07100 -12.74958 -12.49712 -12.39113 -12.20030 -11.89149 -11.53215 -11.47215 -11.39927 -11.12790 -10.55696 -9.60951 -8.20303 -6.32109 0.82716 1.40057 1.43848 1.51755 2.19178 2.41057 2.74689 3.11836 3.12774 3.44935 3.96982 4.00490 4.20126 4.29930 4.32859 4.65804 4.69029 4.90002 4.94774 5.00806 5.12664 5.20611 5.48765 5.64741 5.71512 5.76815 5.84194 6.05646 6.23919 6.28886 6.84581 7.37313 8.91685 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.071414 B = 0.005006 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.983311 B = 5592.126148 C = 5745.629922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.024 3.976 10 C -0.091 4.091 11 C 0.062 3.938 12 N -0.647 5.647 13 C 0.025 3.975 14 H 0.127 0.873 15 C -0.131 4.131 16 C 0.047 3.953 17 O -0.368 6.368 18 C 0.448 3.552 19 O -0.504 6.504 20 H 0.264 0.736 21 H -0.004 1.004 22 H -0.016 1.016 23 H 0.064 0.936 24 H 0.046 0.954 25 H 0.018 0.982 26 H 0.077 0.923 27 H 0.345 0.655 28 H 0.129 0.871 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.893 -19.927 -3.338 21.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.014 4.014 10 C -0.129 4.129 11 C -0.067 4.067 12 N -0.279 5.279 13 C -0.087 4.087 14 H 0.144 0.856 15 C -0.169 4.169 16 C -0.025 4.025 17 O -0.284 6.284 18 C 0.288 3.712 19 O -0.389 6.389 20 H 0.073 0.927 21 H 0.014 0.986 22 H 0.002 0.998 23 H 0.083 0.917 24 H 0.065 0.935 25 H 0.036 0.964 26 H 0.095 0.905 27 H 0.163 0.837 28 H 0.148 0.852 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.551 -19.649 -3.457 20.998 hybrid contribution -0.473 1.124 1.150 1.676 sum 6.077 -18.525 -2.307 19.632 Atomic orbital electron populations 1.70101 1.07929 1.27893 1.51610 1.26031 0.95786 1.03548 0.94621 0.85455 0.78229 0.77824 0.79262 1.18835 1.20808 1.19277 1.21669 0.93614 0.92286 1.50715 0.91991 1.18974 0.94461 0.93250 0.94702 1.21365 0.98037 0.92496 1.01044 1.22038 0.94150 0.90236 1.00237 1.60919 1.18258 0.99768 1.48948 1.23245 1.01231 0.92552 0.91683 0.85552 1.23070 1.01680 0.91326 1.00810 1.24634 1.04893 0.94580 0.78441 1.87041 1.67760 1.35899 1.37739 1.24918 0.75207 0.79691 0.91430 1.90719 1.33563 1.57211 1.57424 0.92749 0.98599 0.99756 0.91714 0.93497 0.96393 0.90457 0.83668 0.85249 0.87741 0.87333 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.51 13.29 21.45 0.28 -58.23 16 2 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 3 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.54 -31.95 9.11 25.60 0.23 -31.71 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.02 1.31 4.97 29.85 0.15 1.45 16 10 C -0.09 -3.88 5.41 30.59 0.17 -3.72 16 11 C 0.06 2.22 5.52 86.30 0.48 2.70 16 12 N -0.65 -17.49 6.25 -491.78 -3.08 -20.56 16 13 C 0.02 0.53 3.30 44.88 0.15 0.68 16 14 H 0.13 2.55 7.84 -2.39 -0.02 2.53 16 15 C -0.13 -1.41 6.95 31.64 0.22 -1.19 16 16 C 0.05 0.45 7.90 72.52 0.57 1.03 16 17 O -0.37 -8.25 11.06 -52.60 -0.58 -8.83 16 18 C 0.45 12.45 7.90 71.44 0.56 13.02 16 19 O -0.50 -19.27 17.33 21.64 0.37 -18.90 16 20 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 21 H 0.00 -0.26 8.14 -2.39 -0.02 -0.27 16 22 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 23 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 24 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.02 0.72 7.46 -2.39 -0.02 0.70 16 26 H 0.08 2.67 8.07 -2.39 -0.02 2.65 16 27 H 0.34 9.27 8.47 -89.69 -0.76 8.51 16 28 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.10 1.11 8.02 -2.39 -0.02 1.09 16 30 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.14 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -74.87 268.23 2.38 -72.49 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: 0.36 Total: 4.33 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: 2.99 Total: -17.42 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -2.79 Total: -78.79 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.21 Total: -27.73 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -74.87 2.38 -72.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308428843.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.906 kcal (2) G-P(sol) polarization free energy of solvation -74.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds