Wall clock time and date at job start Mon Mar 30 2020 02:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30662 * 1 3 3 Si 1.86797 * 120.00454 * 2 1 4 4 H 1.48501 * 109.47557 * 274.98971 * 3 2 1 5 5 H 1.48502 * 109.47186 * 34.98722 * 3 2 1 6 6 H 1.48504 * 109.47396 * 154.98524 * 3 2 1 7 7 C 1.40049 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00262 * 186.14970 * 7 2 1 9 9 C 1.46384 * 119.99778 * 6.14872 * 7 2 1 10 10 O 1.21687 * 119.99511 * 353.93952 * 9 7 2 11 11 N 1.34772 * 119.99706 * 173.93813 * 9 7 2 12 12 C 1.46502 * 119.99863 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47394 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.46732 * 54.99974 * 13 12 11 15 15 C 1.52992 * 109.47087 * 294.99978 * 13 12 11 16 16 O 1.42899 * 109.47148 * 65.00233 * 15 13 12 17 17 C 1.53005 * 109.47285 * 174.99937 * 13 12 11 18 18 C 1.52994 * 117.49918 * 248.74938 * 17 13 12 19 19 C 1.52991 * 117.50020 * 180.08717 * 17 13 12 20 20 H 0.97007 * 119.99784 * 359.97438 * 1 2 3 21 21 H 0.97002 * 120.00407 * 0.02562 * 11 9 7 22 22 H 1.09004 * 109.47034 * 59.99743 * 12 11 9 23 23 H 1.09006 * 109.47122 * 300.00727 * 12 11 9 24 24 H 1.08999 * 109.47641 * 304.99784 * 15 13 12 25 25 H 1.09005 * 109.47090 * 184.99466 * 15 13 12 26 26 H 0.96700 * 114.00657 * 180.02562 * 16 15 13 27 27 H 1.08998 * 115.54677 * 34.41578 * 17 13 12 28 28 H 1.09005 * 117.50057 * 359.97438 * 18 17 13 29 29 H 1.09000 * 117.50014 * 145.02197 * 18 17 13 30 30 H 1.09002 * 117.50243 * 214.97920 * 19 17 13 31 31 H 1.09005 * 117.49949 * 359.97438 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6176 0.0000 4 1 2.3829 2.1073 -1.3947 5 1 1.4949 2.6199 0.8028 6 1 3.5870 1.4119 0.5920 7 6 2.0069 -1.2129 -0.0005 8 1 3.0822 -1.2157 0.0996 9 6 1.2812 -2.4769 -0.1369 10 8 0.0644 -2.4826 -0.1388 11 7 1.9609 -3.6341 -0.2603 12 6 1.2347 -4.8992 -0.3962 13 6 2.2346 -6.0507 -0.5182 14 1 2.9173 -6.0305 0.3313 15 6 3.0307 -5.8996 -1.8159 16 8 3.8256 -4.7139 -1.7517 17 6 1.4802 -7.3817 -0.5347 18 6 1.6407 -8.2998 0.6786 19 6 2.3093 -8.6623 -0.6498 20 1 -0.4850 0.8401 0.0004 21 1 2.9309 -3.6295 -0.2584 22 1 0.6089 -4.8649 -1.2880 23 1 0.6076 -5.0543 0.4818 24 1 2.3425 -5.8306 -2.6584 25 1 3.6797 -6.7655 -1.9469 26 1 4.3580 -4.5539 -2.5430 27 1 0.5085 -7.3652 -1.0282 28 1 2.2841 -7.9559 1.4885 29 1 0.7747 -8.8877 0.9830 30 1 1.8829 -9.4886 -1.2188 31 1 3.3923 -8.5567 -0.7142 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382017488.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:11 Heat of formation + Delta-G solvation = -74.619588 kcal Electronic energy + Delta-G solvation = -14233.225314 eV Core-core repulsion = 11708.124883 eV Total energy + Delta-G solvation = -2525.100430 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.65975 -36.80473 -36.07906 -33.29720 -32.19402 -30.11137 -26.49191 -24.79302 -22.43206 -22.25179 -19.90098 -19.33100 -17.38827 -16.74863 -15.67153 -15.12659 -14.79718 -14.36548 -14.10520 -13.66672 -13.41241 -12.81708 -12.15974 -11.75669 -11.57298 -11.32714 -11.11236 -11.01887 -10.89554 -10.66648 -10.33594 -10.20275 -10.06042 -9.84318 -9.64315 -8.72930 -7.43714 -7.21162 -6.06098 -4.48132 3.21217 3.27807 3.32117 3.72800 4.17924 4.31410 4.72846 4.76260 4.89334 4.98084 5.22487 5.33535 5.45290 5.58941 5.62984 5.69515 5.88267 5.90905 6.00487 6.05011 6.08346 6.29856 6.66422 6.73009 7.56798 7.86736 8.20273 8.40844 8.53521 9.16333 9.82200 10.75253 10.96814 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.053674 B = 0.006834 C = 0.006317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.546888 B = 4095.954296 C = 4431.695001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.087 3.913 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.589 6.589 11 N -0.757 5.757 12 C 0.146 3.854 13 C -0.070 4.070 14 H 0.079 0.921 15 C 0.088 3.912 16 O -0.561 6.561 17 C -0.141 4.141 18 C -0.175 4.175 19 C -0.183 4.183 20 H 0.266 0.734 21 H 0.391 0.609 22 H 0.043 0.957 23 H 0.046 0.954 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.375 0.625 27 H 0.108 0.892 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.096 -13.055 -2.941 15.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.085 0.915 9 C 0.358 3.642 10 O -0.473 6.473 11 N -0.415 5.415 12 C 0.020 3.980 13 C -0.088 4.088 14 H 0.097 0.903 15 C 0.010 3.990 16 O -0.366 6.366 17 C -0.160 4.160 18 C -0.212 4.212 19 C -0.220 4.220 20 H 0.076 0.924 21 H 0.226 0.774 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.222 0.778 27 H 0.127 0.873 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.745 -12.917 -2.348 14.331 hybrid contribution 1.107 0.650 -0.622 1.426 sum 6.852 -12.266 -2.969 14.361 Atomic orbital electron populations 1.70046 1.07052 1.26923 1.36103 1.25701 0.94544 1.00172 0.92729 0.86400 0.80276 0.81722 0.78541 1.19926 1.20584 1.18938 1.20903 0.94057 0.89707 1.53471 0.91518 1.18207 0.87048 0.82667 0.76289 1.90574 1.14283 1.86758 1.55680 1.46121 1.09433 1.05018 1.80908 1.20746 0.93204 0.84005 1.00039 1.20991 0.96904 0.93251 0.97695 0.90292 1.22120 0.92893 0.86516 0.97470 1.86457 1.61741 1.44324 1.44075 1.22147 1.00657 0.90142 1.03039 1.23008 1.03094 1.03323 0.91779 1.22960 0.99280 0.98746 1.01020 0.92356 0.77407 0.93875 0.93596 0.93774 0.94303 0.77835 0.87344 0.88680 0.88792 0.88937 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -24.13 11.85 55.55 0.66 -23.47 16 2 C 0.09 2.55 5.49 -17.37 -0.10 2.45 16 3 Si 0.91 20.94 29.56 -169.99 -5.03 15.92 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 7 C -0.54 -16.26 9.54 -35.63 -0.34 -16.60 16 8 H 0.07 1.85 7.85 -52.49 -0.41 1.44 16 9 C 0.55 16.83 7.74 -12.99 -0.10 16.73 16 10 O -0.59 -20.13 15.05 5.20 0.08 -20.05 16 11 N -0.76 -18.44 5.00 -61.72 -0.31 -18.75 16 12 C 0.15 3.01 5.05 -4.04 -0.02 2.99 16 13 C -0.07 -1.05 2.44 -90.62 -0.22 -1.27 16 14 H 0.08 1.23 7.90 -51.93 -0.41 0.82 16 15 C 0.09 1.19 6.34 37.15 0.24 1.43 16 16 O -0.56 -8.34 10.88 -35.23 -0.38 -8.72 16 17 C -0.14 -1.75 5.15 -90.63 -0.47 -2.22 16 18 C -0.18 -1.91 10.18 -26.70 -0.27 -2.18 16 19 C -0.18 -1.82 9.68 -26.70 -0.26 -2.08 16 20 H 0.27 7.51 8.29 -40.82 -0.34 7.17 16 21 H 0.39 8.83 6.27 -40.82 -0.26 8.57 16 22 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.04 0.43 7.13 -51.93 -0.37 0.06 16 26 H 0.37 3.85 9.12 45.56 0.42 4.26 16 27 H 0.11 1.35 8.11 -51.93 -0.42 0.93 16 28 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 0.89 7.59 -51.93 -0.39 0.49 16 LS Contribution 266.29 15.07 4.01 4.01 Total: -1.00 -36.50 266.29 -6.02 -42.52 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -3.51 Total: 9.31 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -1.54 Total: -0.76 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.35 Total: -42.22 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.31 Total: -28.77 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -36.50 -6.02 -42.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382017488.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.098 kcal (2) G-P(sol) polarization free energy of solvation -36.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds