Wall clock time and date at job start Mon Mar 30 2020 02:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47135 * 2 1 4 4 C 1.52997 * 109.47135 * 179.97438 * 3 2 1 5 5 O 1.42905 * 113.28091 * 313.06473 * 4 3 2 6 6 C 1.53495 * 114.20669 * 180.02562 * 4 3 2 7 7 N 1.47066 * 87.98658 * 220.34216 * 6 4 3 8 8 C 1.34780 * 136.06263 * 206.86221 * 7 6 4 9 9 O 1.21687 * 119.99315 * 359.97438 * 8 7 6 10 10 C 1.46367 * 120.00039 * 180.02562 * 8 7 6 11 11 H 1.07997 * 120.00623 * 359.97438 * 10 8 7 12 12 C 1.40055 * 119.99553 * 180.02562 * 10 8 7 13 13 N 1.30669 * 120.00386 * 359.97438 * 12 10 8 14 14 Si 1.86805 * 119.99833 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47108 * 59.99836 * 14 12 10 16 16 H 1.48497 * 109.47047 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46917 * 299.99743 * 14 12 10 18 18 C 1.47067 * 87.88528 * 27.11900 * 7 6 4 19 19 H 1.09002 * 109.47011 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47586 * 299.99921 * 1 2 3 21 21 H 1.09007 * 109.47147 * 59.99913 * 1 2 3 22 22 H 1.09003 * 109.47151 * 239.99837 * 2 1 3 23 23 H 1.08997 * 109.47141 * 119.99968 * 2 1 3 24 24 H 1.09003 * 109.47234 * 59.99888 * 3 2 1 25 25 H 1.08997 * 109.47081 * 300.00005 * 3 2 1 26 26 H 0.96696 * 113.99817 * 46.93921 * 5 4 3 27 27 H 1.09005 * 113.46950 * 105.56781 * 6 4 3 28 28 H 1.08994 * 113.52293 * 335.13266 * 6 4 3 29 29 H 0.96998 * 120.00171 * 180.02562 * 13 12 10 30 30 H 1.09007 * 113.46858 * 87.65629 * 18 7 6 31 31 H 1.08993 * 113.47208 * 218.09965 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 8 4.1344 0.5463 0.9600 6 6 4.1993 2.8425 0.0013 7 7 5.2003 2.3363 -0.9498 8 6 6.4725 2.6413 -1.2740 9 8 7.0451 3.5496 -0.7013 10 6 7.1647 1.8808 -2.3155 11 1 6.6564 1.0750 -2.8241 12 6 8.4869 2.1975 -2.6519 13 7 9.1022 3.1721 -2.0364 14 14 9.3707 1.2266 -3.9807 15 1 8.6331 1.3574 -5.2629 16 1 10.7484 1.7553 -4.1466 17 1 9.4330 -0.2046 -3.5893 18 6 4.2000 1.3550 -1.3963 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.6766 1.9564 0.8900 25 1 1.6766 1.9563 -0.8900 26 1 3.7358 -0.3347 0.9574 27 1 4.6217 3.1281 0.9648 28 1 3.5509 3.6111 -0.4190 29 1 10.0178 3.3917 -2.2697 30 1 3.5509 1.7267 -2.1892 31 1 4.6227 0.3759 -1.6213 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384097411.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:35 Heat of formation + Delta-G solvation = -88.238842 kcal Electronic energy + Delta-G solvation = -14365.463369 eV Core-core repulsion = 11839.772364 eV Total energy + Delta-G solvation = -2525.691006 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.28075 -38.50379 -36.25281 -34.89678 -34.67388 -30.65229 -28.65165 -26.85225 -26.61811 -22.88194 -21.41901 -20.72476 -18.75007 -17.82616 -17.57904 -16.49382 -16.12126 -16.00116 -15.63957 -15.02769 -14.41319 -14.03971 -13.83909 -13.66158 -13.20294 -13.06905 -12.89628 -12.74233 -12.57134 -12.43477 -12.06682 -11.99978 -11.50296 -11.29838 -10.97284 -10.80602 -9.91517 -9.21010 -8.34812 -6.92016 1.35972 1.40854 1.53158 2.19004 2.38741 2.63905 3.02244 3.38983 3.49970 3.85508 4.08696 4.28925 4.47768 4.52359 4.58549 4.66770 4.72117 4.89948 4.98533 5.00217 5.10032 5.15324 5.24917 5.34838 5.42126 5.52099 5.90756 6.38563 6.79692 6.87398 7.56085 8.38135 8.61546 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.049640 B = 0.007219 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.930446 B = 3877.646825 C = 4203.315900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C -0.120 4.120 4 C 0.114 3.886 5 O -0.555 6.555 6 C 0.098 3.902 7 N -0.679 5.679 8 C 0.562 3.438 9 O -0.637 6.637 10 C -0.564 4.564 11 H 0.083 0.917 12 C 0.025 3.975 13 N -0.824 5.824 14 Si 1.005 2.995 15 H -0.251 1.251 16 H -0.270 1.270 17 H -0.254 1.254 18 C 0.085 3.915 19 H 0.061 0.939 20 H 0.055 0.945 21 H 0.058 0.942 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.391 0.609 27 H 0.040 0.960 28 H 0.102 0.898 29 H 0.277 0.723 30 H 0.098 0.902 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.183 -9.091 -0.303 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C -0.158 4.158 4 C 0.072 3.928 5 O -0.364 6.364 6 C -0.025 4.025 7 N -0.418 5.418 8 C 0.370 3.630 9 O -0.525 6.525 10 C -0.600 4.600 11 H 0.102 0.898 12 C -0.189 4.189 13 N -0.454 5.454 14 Si 0.823 3.177 15 H -0.174 1.174 16 H -0.194 1.194 17 H -0.178 1.178 18 C -0.038 4.038 19 H 0.080 0.920 20 H 0.075 0.925 21 H 0.077 0.923 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.098 0.902 25 H 0.109 0.891 26 H 0.243 0.757 27 H 0.058 0.942 28 H 0.119 0.881 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.129 -7.922 0.120 17.078 hybrid contribution 0.444 -0.340 -0.363 0.667 sum -14.685 -8.262 -0.242 16.851 Atomic orbital electron populations 1.21717 0.94404 1.02231 1.02154 1.21542 0.97176 0.95234 1.02696 1.21987 0.90022 0.99458 1.04339 1.22400 0.93014 0.89590 0.87749 1.86560 1.64970 1.26818 1.58091 1.23058 0.89544 0.96477 0.93456 1.49614 1.10794 1.39096 1.42265 1.18375 0.78306 0.83210 0.83107 1.90539 1.66801 1.36404 1.58758 1.21253 0.99073 1.19011 1.20699 0.89841 1.27108 0.97753 0.95211 0.98849 1.70193 1.11921 1.25804 1.37443 0.84980 0.76936 0.78533 0.77251 1.17437 1.19445 1.17764 1.23627 0.88981 0.93542 0.97677 0.91963 0.92544 0.92331 0.91215 0.91205 0.90161 0.89051 0.75720 0.94172 0.88059 0.91327 0.88408 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 71.98 0.71 -1.07 16 2 C -0.13 -1.89 5.38 30.59 0.16 -1.73 16 3 C -0.12 -2.30 5.00 30.59 0.15 -2.14 16 4 C 0.11 3.46 1.66 -10.46 -0.02 3.45 16 5 O -0.56 -18.09 13.51 -148.98 -2.01 -20.10 16 6 C 0.10 3.95 8.04 83.18 0.67 4.62 16 7 N -0.68 -34.28 3.69 -863.88 -3.19 -37.46 16 8 C 0.56 36.01 8.00 86.36 0.69 36.70 16 9 O -0.64 -46.87 15.80 -4.31 -0.07 -46.94 16 10 C -0.56 -34.24 9.38 24.83 0.23 -34.01 16 11 H 0.08 4.58 7.76 -2.91 -0.02 4.55 16 12 C 0.03 1.49 5.50 85.31 0.47 1.96 16 13 N -0.82 -52.89 11.83 21.84 0.26 -52.63 16 14 Si 1.01 42.31 29.56 68.60 2.03 44.33 16 15 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 16 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 17 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 18 C 0.09 3.04 7.74 83.18 0.64 3.69 16 19 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 20 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 21 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 22 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.07 0.95 6.70 -2.39 -0.02 0.93 16 24 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.09 1.54 7.89 -2.39 -0.02 1.52 16 26 H 0.39 8.53 6.93 -74.06 -0.51 8.02 16 27 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.10 3.44 8.10 -2.39 -0.02 3.42 16 29 H 0.28 15.96 8.29 -92.71 -0.77 15.19 16 30 H 0.10 2.91 7.93 -2.38 -0.02 2.89 16 31 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -86.17 266.92 1.34 -84.83 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.61 Total: 16.52 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 3.72 Total: 11.46 kcal Atomic # 7 Polarization: -87.16 SS G_CDS: -2.93 Total: -90.09 kcal Atomic # 8 Polarization: -64.96 SS G_CDS: -2.08 Total: -67.04 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -86.17 1.34 -84.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384097411.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.413 kcal (2) G-P(sol) polarization free energy of solvation -86.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds