Wall clock time and date at job start Mon Mar 30 2020 02:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99801 * 2 1 4 4 H 1.48493 * 109.47468 * 270.00560 * 3 2 1 5 5 H 1.48499 * 109.47219 * 30.00686 * 3 2 1 6 6 H 1.48501 * 109.47060 * 150.00243 * 3 2 1 7 7 C 1.37873 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00189 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99926 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.46962 * 179.97438 * 9 7 2 11 11 C 1.42901 * 113.99820 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47108 * 180.02562 * 11 10 9 13 13 N 1.46498 * 109.47601 * 64.99876 * 12 11 10 14 14 C 1.46768 * 124.34879 * 89.99607 * 13 12 11 15 15 C 1.54480 * 105.55098 * 197.08340 * 14 13 12 16 16 C 1.54631 * 101.76472 * 334.54015 * 15 14 13 17 17 C 1.34621 * 124.47196 * 270.02849 * 13 12 11 18 18 O 1.21286 * 124.90539 * 359.55259 * 17 13 12 19 19 H 0.97004 * 120.00288 * 359.97438 * 1 2 3 20 20 H 1.08993 * 109.47592 * 59.99791 * 9 7 2 21 21 H 1.08997 * 109.46720 * 299.99031 * 9 7 2 22 22 H 1.08998 * 109.47077 * 60.00552 * 11 10 9 23 23 H 1.08996 * 109.47326 * 299.99944 * 11 10 9 24 24 H 1.09002 * 109.47341 * 304.99997 * 12 11 10 25 25 H 1.08998 * 109.47560 * 184.99877 * 12 11 10 26 26 H 1.09002 * 110.24468 * 78.03845 * 14 13 12 27 27 H 1.09002 * 110.24463 * 316.12602 * 14 13 12 28 28 H 1.08995 * 110.97082 * 92.66028 * 15 14 13 29 29 H 1.09001 * 110.96924 * 216.42557 * 15 14 13 30 30 H 1.09000 * 110.48694 * 143.47575 * 16 15 14 31 31 H 1.08994 * 110.49106 * 266.12244 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 8 2.1797 -3.5852 -0.0027 11 6 1.5652 -4.8754 -0.0032 12 6 2.6482 -5.9561 -0.0036 13 7 3.4061 -5.8885 1.2482 14 6 3.0588 -6.6277 2.4676 15 6 3.8342 -5.9324 3.6085 16 6 5.0230 -5.3044 2.8447 17 6 4.5106 -5.1407 1.4307 18 8 5.0204 -4.4376 0.5842 19 1 -0.4851 0.8401 0.0004 20 1 0.6247 -2.5564 -0.8919 21 1 0.6242 -2.5575 0.8881 22 1 0.9448 -4.9819 -0.8931 23 1 0.9453 -4.9830 0.8868 24 1 3.3218 -5.7952 -0.8453 25 1 2.1823 -6.9374 -0.0936 26 1 3.3704 -7.6685 2.3794 27 1 1.9858 -6.5700 2.6509 28 1 3.2245 -5.1629 4.0820 29 1 4.1823 -6.6588 4.3428 30 1 5.2814 -4.3352 3.2714 31 1 5.8841 -5.9723 2.8634 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385222763.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:08 Heat of formation + Delta-G solvation = -84.894980 kcal Electronic energy + Delta-G solvation = -14391.123715 eV Core-core repulsion = 11865.577710 eV Total energy + Delta-G solvation = -2525.546005 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.94546 -36.68682 -35.90538 -33.13758 -32.33464 -28.70278 -27.35097 -26.71979 -22.75689 -22.21239 -21.57582 -19.03554 -16.60372 -16.49773 -16.15026 -15.52553 -14.83192 -14.54260 -14.22487 -13.62934 -13.44479 -13.13865 -12.79481 -12.38441 -12.07140 -11.91626 -11.38911 -11.18919 -10.92011 -10.78238 -10.73810 -10.60524 -10.01714 -9.33249 -9.02424 -8.76128 -8.34659 -8.10567 -6.04861 -4.05215 3.04184 3.34167 3.35515 3.39764 3.47366 4.40849 4.53895 4.56807 4.85711 4.91099 5.18814 5.31580 5.41584 5.50667 5.57730 5.66259 5.73896 5.90556 5.92475 6.03858 6.06131 6.26742 6.87948 7.13619 7.47149 7.50548 7.88537 8.22662 8.63871 8.66787 9.10385 9.59494 11.06888 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.037009 B = 0.007723 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.381209 B = 3624.882120 C = 3930.185676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.196 3.804 10 O -0.381 6.381 11 C 0.042 3.958 12 C 0.132 3.868 13 N -0.620 5.620 14 C 0.104 3.896 15 C -0.132 4.132 16 C -0.155 4.155 17 C 0.518 3.482 18 O -0.509 6.509 19 H 0.263 0.737 20 H 0.003 0.997 21 H 0.001 0.999 22 H 0.045 0.955 23 H 0.036 0.964 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.580 -14.930 6.625 16.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.547 4.547 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.300 6.300 11 C -0.036 4.036 12 C 0.010 3.990 13 N -0.355 5.355 14 C -0.020 4.020 15 C -0.169 4.169 16 C -0.195 4.195 17 C 0.305 3.695 18 O -0.383 6.383 19 H 0.072 0.928 20 H 0.021 0.979 21 H 0.019 0.981 22 H 0.063 0.937 23 H 0.054 0.946 24 H 0.105 0.895 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.870 -14.393 6.090 16.369 hybrid contribution -0.236 0.831 0.046 0.865 sum 4.635 -13.562 6.136 15.590 Atomic orbital electron populations 1.69967 1.06087 1.27019 1.51104 1.24942 0.94962 0.99400 0.95271 0.86342 0.79727 0.82221 0.78279 1.20445 1.21131 1.19578 1.21096 0.94214 0.89313 1.50095 0.91454 1.20172 0.88751 0.83937 0.95017 1.88013 1.34602 1.12349 1.95034 1.22686 0.94661 0.87066 0.99237 1.21414 0.94182 0.97431 0.85969 1.48174 1.28357 1.46524 1.12495 1.21986 1.00410 0.95235 0.84328 1.22566 0.96723 1.00634 0.97017 1.22312 0.99062 1.03826 0.94335 1.20778 0.80289 0.78635 0.89810 1.90759 1.60796 1.37699 1.49021 0.92779 0.97922 0.98086 0.93660 0.94625 0.89537 0.89910 0.91623 0.90774 0.89893 0.89623 0.88178 0.88452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.91 13.29 55.43 0.74 -27.18 16 2 C 0.05 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.91 22.95 29.54 -169.99 -5.02 17.93 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.51 -15.94 9.43 -34.44 -0.32 -16.26 16 8 H 0.07 2.16 7.81 -52.48 -0.41 1.75 16 9 C 0.20 5.67 5.69 36.01 0.20 5.88 16 10 O -0.38 -9.90 9.91 -35.23 -0.35 -10.25 16 11 C 0.04 0.81 6.28 37.16 0.23 1.05 16 12 C 0.13 2.04 6.34 -4.04 -0.03 2.02 16 13 N -0.62 -9.55 2.90 -172.35 -0.50 -10.05 16 14 C 0.10 1.09 7.34 -3.12 -0.02 1.07 16 15 C -0.13 -1.27 7.18 -25.10 -0.18 -1.45 16 16 C -0.15 -1.93 6.86 -26.74 -0.18 -2.11 16 17 C 0.52 9.33 7.74 -10.77 -0.08 9.24 16 18 O -0.51 -11.90 17.52 5.55 0.10 -11.80 16 19 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 20 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 21 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.09 1.47 7.93 -51.93 -0.41 1.06 16 25 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 270.42 15.07 4.08 4.08 Total: -1.00 -36.87 270.42 -6.05 -42.92 By element: Atomic # 1 Polarization: -2.02 SS G_CDS: -4.61 Total: -6.63 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -0.48 Total: 0.99 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.24 Total: -37.22 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.25 Total: -22.05 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -36.87 -6.05 -42.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385222763.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.977 kcal (2) G-P(sol) polarization free energy of solvation -36.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds