Wall clock time and date at job start Mon Mar 30 2020 02:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99801 * 2 1 4 4 H 1.48493 * 109.47468 * 270.00560 * 3 2 1 5 5 H 1.48499 * 109.47219 * 30.00686 * 3 2 1 6 6 H 1.48501 * 109.47060 * 150.00243 * 3 2 1 7 7 C 1.37873 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00189 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99926 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.46962 * 179.97438 * 9 7 2 11 11 C 1.42901 * 113.99820 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47108 * 180.02562 * 11 10 9 13 13 N 1.46498 * 109.47601 * 64.99876 * 12 11 10 14 14 C 1.46768 * 124.34879 * 89.99607 * 13 12 11 15 15 C 1.54480 * 105.55098 * 197.08340 * 14 13 12 16 16 C 1.54631 * 101.76472 * 334.54015 * 15 14 13 17 17 C 1.34621 * 124.47196 * 270.02849 * 13 12 11 18 18 O 1.21286 * 124.90539 * 359.55259 * 17 13 12 19 19 H 0.97004 * 120.00288 * 359.97438 * 1 2 3 20 20 H 1.08993 * 109.47592 * 59.99791 * 9 7 2 21 21 H 1.08997 * 109.46720 * 299.99031 * 9 7 2 22 22 H 1.08998 * 109.47077 * 60.00552 * 11 10 9 23 23 H 1.08996 * 109.47326 * 299.99944 * 11 10 9 24 24 H 1.09002 * 109.47341 * 304.99997 * 12 11 10 25 25 H 1.08998 * 109.47560 * 184.99877 * 12 11 10 26 26 H 1.09002 * 110.24468 * 78.03845 * 14 13 12 27 27 H 1.09002 * 110.24463 * 316.12602 * 14 13 12 28 28 H 1.08995 * 110.97082 * 92.66028 * 15 14 13 29 29 H 1.09001 * 110.96924 * 216.42557 * 15 14 13 30 30 H 1.09000 * 110.48694 * 143.47575 * 16 15 14 31 31 H 1.08994 * 110.49106 * 266.12244 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 8 2.1797 -3.5852 -0.0027 11 6 1.5652 -4.8754 -0.0032 12 6 2.6482 -5.9561 -0.0036 13 7 3.4061 -5.8885 1.2482 14 6 3.0588 -6.6277 2.4676 15 6 3.8342 -5.9324 3.6085 16 6 5.0230 -5.3044 2.8447 17 6 4.5106 -5.1407 1.4307 18 8 5.0204 -4.4376 0.5842 19 1 -0.4851 0.8401 0.0004 20 1 0.6247 -2.5564 -0.8919 21 1 0.6242 -2.5575 0.8881 22 1 0.9448 -4.9819 -0.8931 23 1 0.9453 -4.9830 0.8868 24 1 3.3218 -5.7952 -0.8453 25 1 2.1823 -6.9374 -0.0936 26 1 3.3704 -7.6685 2.3794 27 1 1.9858 -6.5700 2.6509 28 1 3.2245 -5.1629 4.0820 29 1 4.1823 -6.6588 4.3428 30 1 5.2814 -4.3352 3.2714 31 1 5.8841 -5.9723 2.8634 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385222763.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:08 Heat of formation + Delta-G solvation = -112.259059 kcal Electronic energy + Delta-G solvation = -14392.310310 eV Core-core repulsion = 11865.577710 eV Total energy + Delta-G solvation = -2526.732600 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.16497 -38.59025 -37.27923 -35.10459 -33.92970 -30.29942 -28.76057 -28.36038 -24.64827 -23.96352 -22.58473 -20.30725 -18.70518 -17.86718 -17.59819 -17.21479 -16.43391 -16.24599 -16.06618 -15.21068 -14.62835 -14.58122 -14.17597 -13.70706 -13.63636 -13.37714 -12.98462 -12.81774 -12.63975 -12.44785 -12.22771 -12.08110 -11.77293 -11.33244 -10.93159 -10.70000 -10.26431 -9.58516 -8.37744 -6.49868 1.33604 1.37010 1.49593 1.71145 2.20786 2.31265 2.94950 3.19026 3.54793 3.71142 4.09835 4.18516 4.19987 4.29453 4.44600 4.52743 4.70271 4.75056 4.76330 4.88924 4.92312 5.10263 5.11594 5.27590 5.49156 5.72625 5.91865 6.29077 6.50161 6.80121 7.22482 7.33309 8.74514 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.037009 B = 0.007723 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.381209 B = 3624.882120 C = 3930.185676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.265 1.265 6 H -0.271 1.271 7 C -0.550 4.550 8 H 0.047 0.953 9 C 0.212 3.788 10 O -0.405 6.405 11 C 0.030 3.970 12 C 0.135 3.865 13 N -0.623 5.623 14 C 0.096 3.904 15 C -0.121 4.121 16 C -0.149 4.149 17 C 0.493 3.507 18 O -0.583 6.583 19 H 0.273 0.727 20 H -0.014 1.014 21 H -0.015 1.015 22 H 0.057 0.943 23 H 0.047 0.953 24 H 0.063 0.937 25 H 0.139 0.861 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.130 0.870 30 H 0.090 0.910 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.586 -16.007 7.990 18.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.190 1.190 6 H -0.196 1.196 7 C -0.588 4.588 8 H 0.066 0.934 9 C 0.137 3.863 10 O -0.325 6.325 11 C -0.048 4.048 12 C 0.013 3.987 13 N -0.357 5.357 14 C -0.025 4.025 15 C -0.159 4.159 16 C -0.189 4.189 17 C 0.283 3.717 18 O -0.462 6.462 19 H 0.082 0.918 20 H 0.003 0.997 21 H 0.003 0.997 22 H 0.075 0.925 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.157 0.843 26 H 0.122 0.878 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.148 0.852 30 H 0.109 0.891 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.832 -15.531 7.489 17.907 hybrid contribution -0.309 1.050 -0.374 1.157 sum 4.523 -14.481 7.115 16.757 Atomic orbital electron populations 1.70046 1.07507 1.28737 1.50337 1.25913 0.96032 1.03173 0.93746 0.85232 0.78273 0.77180 0.79024 1.19122 1.18963 1.19575 1.21327 0.93553 0.91362 1.52543 0.93418 1.19762 0.88448 0.84799 0.93246 1.87985 1.35019 1.14327 1.95134 1.23123 0.96418 0.84963 1.00280 1.21477 0.92904 0.98493 0.85852 1.48457 1.27320 1.45993 1.13897 1.22395 1.01314 0.96547 0.82223 1.22641 0.94963 1.01071 0.97197 1.22357 1.01241 1.04470 0.90852 1.21896 0.80737 0.77733 0.91362 1.90705 1.63093 1.40829 1.51587 0.91843 0.99657 0.99710 0.92507 0.93521 0.91848 0.84291 0.87814 0.89776 0.91037 0.85216 0.89135 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.67 13.29 21.45 0.28 -57.39 16 2 C 0.01 0.61 5.46 84.65 0.46 1.08 16 3 Si 0.98 47.22 29.54 68.60 2.03 49.25 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 7 C -0.55 -35.69 9.43 25.60 0.24 -35.44 16 8 H 0.05 3.20 7.81 -2.91 -0.02 3.18 16 9 C 0.21 12.84 5.69 71.24 0.41 13.24 16 10 O -0.40 -21.92 9.91 -148.98 -1.48 -23.39 16 11 C 0.03 1.16 6.28 71.98 0.45 1.61 16 12 C 0.13 4.04 6.34 86.38 0.55 4.59 16 13 N -0.62 -18.39 2.90 -817.66 -2.37 -20.77 16 14 C 0.10 1.69 7.34 86.83 0.64 2.32 16 15 C -0.12 -1.94 7.18 31.65 0.23 -1.72 16 16 C -0.15 -3.50 6.86 30.59 0.21 -3.29 16 17 C 0.49 17.98 7.74 87.87 0.68 18.66 16 18 O -0.58 -28.76 17.52 -3.05 -0.05 -28.81 16 19 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 20 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 21 H -0.01 -0.92 8.14 -2.39 -0.02 -0.93 16 22 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 23 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.06 2.20 7.93 -2.39 -0.02 2.18 16 25 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 26 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 29 H 0.13 1.00 8.14 -2.39 -0.02 0.99 16 30 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -84.67 270.42 3.36 -81.31 By element: Atomic # 1 Polarization: -2.34 SS G_CDS: 1.09 Total: -1.24 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 3.86 Total: 1.05 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -2.09 Total: -78.16 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -1.53 Total: -52.21 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -84.67 3.36 -81.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385222763.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.949 kcal (2) G-P(sol) polarization free energy of solvation -84.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds