Wall clock time and date at job start Mon Mar 30 2020 02:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99620 * 2 1 4 4 H 1.48499 * 109.47092 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47433 * 299.99916 * 3 2 1 6 6 H 1.48507 * 109.47218 * 60.00067 * 3 2 1 7 7 C 1.37880 * 120.00364 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99612 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99879 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47166 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47350 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47250 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.46842 * 180.02562 * 12 11 10 14 14 C 1.47093 * 125.55889 * 90.00569 * 13 12 11 15 15 C 1.54091 * 103.77776 * 180.02562 * 14 13 12 16 16 O 1.45704 * 104.12991 * 359.92869 * 15 14 13 17 17 C 1.34001 * 125.56070 * 270.01636 * 13 12 11 18 18 O 1.21513 * 123.07229 * 0.03827 * 17 13 12 19 19 H 0.96998 * 120.00290 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.47083 * 60.00058 * 9 7 2 21 21 H 1.08999 * 109.47619 * 300.00170 * 9 7 2 22 22 H 1.09004 * 109.46600 * 60.00340 * 10 9 7 23 23 H 1.08999 * 109.47462 * 300.00844 * 10 9 7 24 24 H 1.09004 * 109.46910 * 60.00629 * 11 10 9 25 25 H 1.08996 * 109.47399 * 300.00376 * 11 10 9 26 26 H 1.09004 * 109.47022 * 60.00243 * 12 11 10 27 27 H 1.08996 * 109.46855 * 300.00254 * 12 11 10 28 28 H 1.09000 * 110.56724 * 61.43908 * 14 13 12 29 29 H 1.09004 * 110.68940 * 298.64853 * 14 13 12 30 30 H 1.09002 * 110.52360 * 118.62859 * 15 14 13 31 31 H 1.09002 * 110.51975 * 241.22721 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4806 -4.9870 0.0012 12 6 2.4749 -6.1499 0.0018 13 7 1.7424 -7.4187 0.0018 14 6 1.3153 -8.1598 -1.1948 15 6 0.5990 -9.3985 -0.6230 16 8 0.6966 -9.2308 0.8210 17 6 1.3521 -8.0932 1.0919 18 8 1.5721 -7.7090 2.2235 19 1 -0.4850 0.8400 -0.0004 20 1 0.6249 -2.5571 -0.8897 21 1 0.6242 -2.5568 0.8902 22 1 2.8721 -3.6042 0.8906 23 1 2.8723 -3.6042 -0.8893 24 1 0.8537 -5.0451 -0.8887 25 1 0.8542 -5.0446 0.8913 26 1 3.1015 -6.0917 0.8919 27 1 3.1016 -6.0926 -0.8881 28 1 2.1789 -8.4572 -1.7896 29 1 0.6274 -7.5620 -1.7929 30 1 -0.4450 -9.4147 -0.9361 31 1 1.1053 -10.3114 -0.9368 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385233734.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:01 Heat of formation + Delta-G solvation = -89.405925 kcal Electronic energy + Delta-G solvation = -13864.715932 eV Core-core repulsion = 11338.974318 eV Total energy + Delta-G solvation = -2525.741614 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.49760 -37.18255 -36.26481 -34.23077 -32.32482 -30.14659 -28.46189 -25.28134 -23.77661 -22.52871 -20.66177 -20.13186 -17.37589 -17.18833 -16.80510 -16.19575 -15.19090 -14.47663 -14.33361 -14.18094 -14.04452 -13.73325 -12.64285 -12.59985 -12.26720 -11.89817 -11.71925 -11.02796 -10.80674 -10.70798 -10.56525 -10.51362 -10.43567 -9.68114 -9.48184 -9.11221 -8.74461 -8.33623 -5.98376 -4.00798 2.43590 2.76487 3.32043 3.39407 3.40763 3.43688 3.98555 4.44129 4.47500 4.59884 4.99965 5.11006 5.23101 5.37409 5.43907 5.54855 5.65686 5.97399 6.08443 6.41752 6.50236 6.73848 6.88531 7.14304 7.33028 7.69668 7.84166 8.02046 8.05244 8.44372 9.06857 9.63342 11.13070 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.068797 B = 0.004919 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.896549 B = 5690.333934 C = 5735.368643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.136 4.136 12 C 0.144 3.856 13 N -0.627 5.627 14 C 0.064 3.936 15 C 0.041 3.959 16 O -0.334 6.334 17 C 0.639 3.361 18 O -0.520 6.520 19 H 0.260 0.740 20 H 0.014 0.986 21 H 0.016 0.984 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.528 -17.488 -5.688 18.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.175 4.175 12 C 0.025 3.975 13 N -0.375 5.375 14 C -0.060 4.060 15 C -0.034 4.034 16 O -0.244 6.244 17 C 0.392 3.608 18 O -0.404 6.404 19 H 0.069 0.931 20 H 0.033 0.967 21 H 0.034 0.966 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.105 0.895 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.122 0.878 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.416 -17.334 -4.932 18.183 hybrid contribution 0.317 0.994 -0.294 1.084 sum 2.733 -16.340 -5.226 17.372 Atomic orbital electron populations 1.69980 1.06084 1.26457 1.51059 1.25039 0.94839 0.99287 0.95371 0.86544 0.80118 0.83823 0.77561 1.19728 1.21048 1.21009 1.21313 0.93084 0.91119 1.50310 0.92612 1.19094 0.94015 0.91332 0.97206 1.21570 0.99166 0.93379 1.00448 1.22078 0.98525 0.94609 1.02255 1.21594 0.93722 0.78779 1.03416 1.48224 1.59402 1.24591 1.05290 1.22793 1.00681 0.92830 0.89708 1.24250 1.03201 0.98969 0.77012 1.87354 1.71700 1.39885 1.25486 1.18598 0.77453 0.79002 0.85731 1.91057 1.59614 1.68951 1.20778 0.93082 0.96723 0.96581 0.93058 0.93237 0.92250 0.91841 0.89510 0.89917 0.89153 0.88875 0.87766 0.87875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 10 C -0.11 -2.17 5.15 -26.74 -0.14 -2.31 16 11 C -0.14 -2.30 5.54 -26.73 -0.15 -2.45 16 12 C 0.14 1.97 6.01 -4.04 -0.02 1.95 16 13 N -0.63 -8.04 2.96 -178.75 -0.53 -8.57 16 14 C 0.06 0.49 7.70 -3.15 -0.02 0.47 16 15 C 0.04 0.28 8.22 37.73 0.31 0.60 16 16 O -0.33 -4.37 11.11 -38.59 -0.43 -4.79 16 17 C 0.64 10.09 8.85 53.71 0.48 10.57 16 18 O -0.52 -10.51 17.55 -19.10 -0.34 -10.84 16 19 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 20 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 21 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.09 1.27 7.93 -51.93 -0.41 0.86 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 270.32 15.07 4.07 4.07 Total: -1.00 -34.86 270.32 -6.21 -41.06 By element: Atomic # 1 Polarization: -2.05 SS G_CDS: -4.60 Total: -6.66 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -0.10 Total: -4.48 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.21 Total: -35.18 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.76 Total: -15.63 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -34.86 -6.21 -41.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385233734.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.342 kcal (2) G-P(sol) polarization free energy of solvation -34.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds