Wall clock time and date at job start Mon Mar 30 2020 02:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99620 * 2 1 4 4 H 1.48499 * 109.47092 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47433 * 299.99916 * 3 2 1 6 6 H 1.48507 * 109.47218 * 60.00067 * 3 2 1 7 7 C 1.37880 * 120.00364 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99612 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99879 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47166 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47350 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47250 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.46842 * 180.02562 * 12 11 10 14 14 C 1.47093 * 125.55889 * 90.00569 * 13 12 11 15 15 C 1.54091 * 103.77776 * 180.02562 * 14 13 12 16 16 O 1.45704 * 104.12991 * 359.92869 * 15 14 13 17 17 C 1.34001 * 125.56070 * 270.01636 * 13 12 11 18 18 O 1.21513 * 123.07229 * 0.03827 * 17 13 12 19 19 H 0.96998 * 120.00290 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.47083 * 60.00058 * 9 7 2 21 21 H 1.08999 * 109.47619 * 300.00170 * 9 7 2 22 22 H 1.09004 * 109.46600 * 60.00340 * 10 9 7 23 23 H 1.08999 * 109.47462 * 300.00844 * 10 9 7 24 24 H 1.09004 * 109.46910 * 60.00629 * 11 10 9 25 25 H 1.08996 * 109.47399 * 300.00376 * 11 10 9 26 26 H 1.09004 * 109.47022 * 60.00243 * 12 11 10 27 27 H 1.08996 * 109.46855 * 300.00254 * 12 11 10 28 28 H 1.09000 * 110.56724 * 61.43908 * 14 13 12 29 29 H 1.09004 * 110.68940 * 298.64853 * 14 13 12 30 30 H 1.09002 * 110.52360 * 118.62859 * 15 14 13 31 31 H 1.09002 * 110.51975 * 241.22721 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4806 -4.9870 0.0012 12 6 2.4749 -6.1499 0.0018 13 7 1.7424 -7.4187 0.0018 14 6 1.3153 -8.1598 -1.1948 15 6 0.5990 -9.3985 -0.6230 16 8 0.6966 -9.2308 0.8210 17 6 1.3521 -8.0932 1.0919 18 8 1.5721 -7.7090 2.2235 19 1 -0.4850 0.8400 -0.0004 20 1 0.6249 -2.5571 -0.8897 21 1 0.6242 -2.5568 0.8902 22 1 2.8721 -3.6042 0.8906 23 1 2.8723 -3.6042 -0.8893 24 1 0.8537 -5.0451 -0.8887 25 1 0.8542 -5.0446 0.8913 26 1 3.1015 -6.0917 0.8919 27 1 3.1016 -6.0926 -0.8881 28 1 2.1789 -8.4572 -1.7896 29 1 0.6274 -7.5620 -1.7929 30 1 -0.4450 -9.4147 -0.9361 31 1 1.1053 -10.3114 -0.9368 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385233734.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:01 Heat of formation + Delta-G solvation = -113.321508 kcal Electronic energy + Delta-G solvation = -13865.752990 eV Core-core repulsion = 11338.974318 eV Total energy + Delta-G solvation = -2526.778672 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.47361 -38.35945 -37.53233 -35.88115 -34.17148 -31.30355 -29.84149 -26.98462 -24.57787 -24.13087 -21.95253 -21.71603 -18.50251 -18.32574 -18.08278 -17.74314 -16.53489 -16.41829 -15.65256 -15.05835 -15.03148 -14.84481 -14.26726 -13.97468 -13.66652 -13.28203 -13.13611 -12.85838 -12.37894 -12.33417 -12.18090 -11.78545 -11.65667 -11.40879 -11.36983 -11.14829 -10.56405 -9.87785 -8.20249 -6.31817 1.40023 1.41110 1.45008 1.54474 1.61749 2.41296 2.64619 3.13016 3.39933 3.71372 3.95718 4.13144 4.20601 4.37635 4.52439 4.56344 4.72210 4.77425 4.84089 4.88202 5.16758 5.21925 5.27587 5.46027 5.54182 5.75742 5.86195 6.24647 6.34456 6.86349 6.91814 7.37999 8.92041 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.068797 B = 0.004919 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.896549 B = 5690.333934 C = 5735.368643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.124 4.124 12 C 0.152 3.848 13 N -0.625 5.625 14 C 0.059 3.941 15 C 0.035 3.965 16 O -0.351 6.351 17 C 0.632 3.368 18 O -0.581 6.581 19 H 0.263 0.737 20 H -0.005 1.005 21 H -0.020 1.020 22 H 0.048 0.952 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.031 0.969 26 H 0.072 0.928 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.107 0.893 30 H 0.126 0.874 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.845 -18.150 -7.697 20.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.207 1.207 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.163 4.163 12 C 0.032 3.968 13 N -0.371 5.371 14 C -0.063 4.063 15 C -0.038 4.038 16 O -0.261 6.261 17 C 0.386 3.614 18 O -0.470 6.470 19 H 0.072 0.928 20 H 0.013 0.987 21 H -0.002 1.002 22 H 0.066 0.934 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.141 0.859 28 H 0.143 0.857 29 H 0.125 0.875 30 H 0.144 0.856 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.729 -18.036 -6.997 19.701 hybrid contribution -0.172 1.137 0.256 1.178 sum 3.556 -16.898 -6.741 18.538 Atomic orbital electron populations 1.70118 1.07961 1.27709 1.51948 1.26038 0.95763 1.03575 0.94734 0.85366 0.79167 0.78575 0.77732 1.18308 1.20139 1.20698 1.21783 0.93722 0.92350 1.50198 0.91812 1.19036 0.94582 0.93520 0.94474 1.21361 0.97984 0.92701 1.01266 1.21893 0.98712 0.94558 1.01160 1.21434 0.92748 0.77925 1.04701 1.48257 1.58422 1.24039 1.06413 1.23221 1.02475 0.92542 0.88039 1.24789 1.05256 1.00184 0.73565 1.87313 1.70898 1.38484 1.29401 1.18851 0.77306 0.79630 0.85584 1.90993 1.62023 1.70703 1.23307 0.92816 0.98698 1.00177 0.93363 0.91104 0.91250 0.95052 0.90937 0.85927 0.85710 0.87502 0.85573 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.20 13.29 21.45 0.28 -57.91 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 3 Si 0.97 44.66 29.54 68.60 2.03 46.68 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.54 -31.30 9.11 25.60 0.23 -31.06 16 8 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.02 1.13 4.97 29.85 0.15 1.28 16 10 C -0.10 -3.81 5.15 30.59 0.16 -3.66 16 11 C -0.12 -4.17 5.54 30.59 0.17 -4.00 16 12 C 0.15 3.88 6.01 86.38 0.52 4.40 16 13 N -0.62 -14.88 2.96 -951.01 -2.82 -17.70 16 14 C 0.06 0.68 7.70 86.64 0.67 1.35 16 15 C 0.04 0.38 8.22 72.35 0.59 0.97 16 16 O -0.35 -8.80 11.11 -50.08 -0.56 -9.35 16 17 C 0.63 19.93 8.85 129.91 1.15 21.08 16 18 O -0.58 -24.52 17.55 19.63 0.34 -24.18 16 19 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 20 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 21 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 22 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 23 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 24 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 25 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.07 2.09 7.93 -2.38 -0.02 2.07 16 27 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.13 0.78 8.14 -2.39 -0.02 0.77 16 31 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -79.21 270.32 4.48 -74.73 By element: Atomic # 1 Polarization: -3.96 SS G_CDS: 1.10 Total: -2.87 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 4.10 Total: -9.40 kcal Atomic # 7 Polarization: -73.08 SS G_CDS: -2.53 Total: -75.61 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -0.21 Total: -33.53 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -79.21 4.48 -74.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385233734.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.591 kcal (2) G-P(sol) polarization free energy of solvation -79.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds