Wall clock time and date at job start Mon Mar 30 2020 02:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86792 * 120.00047 * 2 1 4 4 H 1.48499 * 109.47063 * 239.99856 * 3 2 1 5 5 H 1.48500 * 109.47216 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46980 * 120.00092 * 3 2 1 7 7 C 1.37874 * 119.99734 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99952 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00451 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47635 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00246 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99942 * 355.00480 * 11 10 9 13 13 C 1.50705 * 120.00022 * 175.28858 * 11 10 9 14 14 C 1.52997 * 115.54737 * 303.05502 * 13 11 10 15 15 C 1.52992 * 109.47459 * 294.74957 * 14 13 11 16 16 O 1.42897 * 109.47558 * 175.87147 * 15 14 13 17 17 C 1.53001 * 117.49380 * 157.38635 * 13 11 10 18 18 C 1.53002 * 117.49784 * 88.72685 * 13 11 10 19 19 H 0.96998 * 119.99626 * 359.97438 * 1 2 3 20 20 H 1.09010 * 109.46758 * 60.00007 * 9 7 2 21 21 H 1.08997 * 109.47132 * 300.00957 * 9 7 2 22 22 H 0.97001 * 119.99415 * 359.97438 * 10 9 7 23 23 H 1.08999 * 109.47049 * 54.75491 * 14 13 11 24 24 H 1.09001 * 109.46462 * 174.74774 * 14 13 11 25 25 H 1.09000 * 109.47279 * 295.87969 * 15 14 13 26 26 H 1.09005 * 109.47137 * 55.87027 * 15 14 13 27 27 H 0.96700 * 114.00419 * 179.97438 * 16 15 14 28 28 H 1.08995 * 117.50148 * 359.97438 * 17 13 11 29 29 H 1.09005 * 117.49459 * 145.02260 * 17 13 11 30 30 H 1.08990 * 117.49885 * 214.98074 * 18 13 11 31 31 H 1.08999 * 117.50020 * 359.97438 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5650 -5.1063 0.0899 13 6 2.7289 -6.0274 -0.1083 14 6 3.6378 -6.0065 -1.3389 15 6 2.7913 -6.1819 -2.6011 16 8 3.6266 -6.0664 -3.7548 17 6 2.2759 -7.3929 0.4125 18 6 3.3135 -6.5816 1.1925 19 1 -0.4849 0.8401 0.0004 20 1 0.6240 -2.5567 -0.8904 21 1 0.6247 -2.5571 0.8896 22 1 3.1567 -3.4354 -0.0009 23 1 4.1655 -5.0539 -1.3847 24 1 4.3607 -6.8194 -1.2703 25 1 2.3213 -7.1653 -2.5898 26 1 2.0208 -5.4114 -2.6319 27 1 3.1556 -6.1676 -4.5932 28 1 1.2728 -7.4637 0.8330 29 1 2.6258 -8.2764 -0.1214 30 1 4.3455 -6.9316 1.1715 31 1 2.9932 -6.1185 2.1258 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393537915.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:09 Heat of formation + Delta-G solvation = -105.801624 kcal Electronic energy + Delta-G solvation = -14173.278922 eV Core-core repulsion = 11646.826337 eV Total energy + Delta-G solvation = -2526.452585 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.13476 -38.32349 -37.23094 -36.16223 -34.36341 -31.46635 -29.51690 -25.84098 -24.28662 -23.46703 -22.89454 -20.65745 -18.82251 -18.24228 -17.48067 -17.09221 -16.52120 -16.25413 -15.84555 -15.37985 -15.00603 -14.69362 -14.09938 -13.87196 -13.36007 -13.13491 -12.95081 -12.70767 -12.51549 -12.36018 -12.24835 -11.56871 -11.50518 -11.09355 -10.89059 -10.82124 -10.68708 -9.88185 -8.31828 -6.48953 1.41248 1.45526 1.53824 1.61666 2.27959 2.48623 2.71276 3.02720 3.23951 3.71715 3.84466 3.95841 4.09341 4.20622 4.38769 4.54261 4.74043 4.88458 4.98056 4.99414 5.05238 5.13550 5.18447 5.24178 5.44805 5.64454 5.81149 6.61101 6.80873 6.85358 7.19811 7.41895 8.80246 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.033236 B = 0.007370 C = 0.006756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.269813 B = 3798.066183 C = 4143.244959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.558 4.558 8 H 0.082 0.918 9 C 0.267 3.733 10 N -0.702 5.702 11 C 0.529 3.471 12 O -0.603 6.603 13 C -0.174 4.174 14 C -0.067 4.067 15 C 0.078 3.922 16 O -0.586 6.586 17 C -0.140 4.140 18 C -0.132 4.132 19 H 0.270 0.730 20 H -0.014 1.014 21 H -0.013 1.013 22 H 0.407 0.593 23 H 0.071 0.929 24 H 0.109 0.891 25 H 0.064 0.936 26 H 0.014 0.986 27 H 0.397 0.603 28 H 0.083 0.917 29 H 0.134 0.866 30 H 0.141 0.859 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.457 -12.557 -2.264 16.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.596 4.596 8 H 0.100 0.900 9 C 0.144 3.856 10 N -0.350 5.350 11 C 0.317 3.683 12 O -0.485 6.485 13 C -0.177 4.177 14 C -0.104 4.104 15 C 0.000 4.000 16 O -0.394 6.394 17 C -0.177 4.177 18 C -0.169 4.169 19 H 0.078 0.922 20 H 0.004 0.996 21 H 0.005 0.995 22 H 0.242 0.758 23 H 0.090 0.910 24 H 0.127 0.873 25 H 0.082 0.918 26 H 0.032 0.968 27 H 0.246 0.754 28 H 0.101 0.899 29 H 0.153 0.847 30 H 0.159 0.841 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.911 -12.474 -1.765 16.029 hybrid contribution -0.595 1.149 -0.430 1.363 sum 9.316 -11.325 -2.196 14.828 Atomic orbital electron populations 1.70133 1.08263 1.28705 1.49785 1.26077 0.95806 1.03922 0.93716 0.85200 0.77945 0.76516 0.79537 1.18675 1.20867 1.18604 1.21568 0.94245 0.90576 1.53209 0.89972 1.18552 0.88650 0.84359 0.93993 1.46169 1.11117 1.05483 1.72244 1.20384 0.88539 0.84290 0.75133 1.90618 1.19492 1.85539 1.52846 1.21331 1.02067 0.94680 0.99613 1.20912 0.96222 1.04565 0.88727 1.22071 0.92177 0.99695 0.86023 1.86367 1.39583 1.96150 1.17291 1.23113 0.99806 0.92559 1.02222 1.23225 1.00850 1.00772 0.92048 0.92163 0.99560 0.99475 0.75804 0.91021 0.87262 0.91782 0.96798 0.75359 0.89853 0.84749 0.84088 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 2 C 0.00 0.25 5.46 84.65 0.46 0.72 16 3 Si 0.99 42.84 29.54 68.60 2.03 44.87 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.56 -31.11 9.28 25.60 0.24 -30.87 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.13 16 9 C 0.27 15.13 5.43 85.63 0.47 15.60 16 10 N -0.70 -31.30 5.53 -466.78 -2.58 -33.88 16 11 C 0.53 22.26 6.46 87.66 0.57 22.83 16 12 O -0.60 -31.05 16.50 -3.05 -0.05 -31.10 16 13 C -0.17 -4.94 1.91 -52.93 -0.10 -5.04 16 14 C -0.07 -1.63 5.44 30.59 0.17 -1.46 16 15 C 0.08 2.06 6.97 71.98 0.50 2.56 16 16 O -0.59 -14.28 13.66 -148.98 -2.03 -16.31 16 17 C -0.14 -3.26 9.76 30.62 0.30 -2.96 16 18 C -0.13 -2.83 9.93 30.62 0.30 -2.53 16 19 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 20 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 21 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 22 H 0.41 15.50 8.16 -92.71 -0.76 14.74 16 23 H 0.07 1.87 7.98 -2.39 -0.02 1.85 16 24 H 0.11 1.98 8.09 -2.39 -0.02 1.96 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.01 0.46 7.59 -2.38 -0.02 0.44 16 27 H 0.40 6.21 9.12 -74.06 -0.68 5.54 16 28 H 0.08 2.34 7.85 -2.39 -0.02 2.32 16 29 H 0.13 2.19 8.14 -2.38 -0.02 2.17 16 30 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -74.44 274.02 0.25 -74.19 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -0.30 Total: 19.92 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 2.90 Total: -1.16 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -2.30 Total: -90.41 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -2.09 Total: -47.41 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -74.44 0.25 -74.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393537915.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.611 kcal (2) G-P(sol) polarization free energy of solvation -74.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds