Wall clock time and date at job start Mon Mar 30 2020 02:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00176 * 2 1 4 4 H 1.48508 * 109.46799 * 239.99601 * 3 2 1 5 5 H 1.48503 * 109.47156 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47296 * 119.99892 * 3 2 1 7 7 C 1.37878 * 119.99492 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00560 * 0.02562 * 7 2 1 10 10 O 1.42895 * 109.47303 * 180.02562 * 9 7 2 11 11 C 1.42900 * 113.99832 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46962 * 179.97438 * 11 10 9 13 13 N 1.46905 * 109.46772 * 64.27590 * 12 11 10 14 14 C 1.48618 * 111.00217 * 58.95537 * 13 12 11 15 15 C 1.54914 * 102.81745 * 158.55698 * 14 13 12 16 16 C 1.52175 * 103.16374 * 322.89644 * 15 14 13 17 17 O 1.20763 * 127.08710 * 202.08280 * 16 15 14 18 18 C 1.47902 * 110.99606 * 175.76294 * 13 12 11 19 19 H 0.97001 * 120.00029 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47027 * 59.99168 * 9 7 2 21 21 H 1.09010 * 109.46322 * 299.99772 * 9 7 2 22 22 H 1.09000 * 109.47359 * 59.99917 * 11 10 9 23 23 H 1.09001 * 109.47440 * 299.99758 * 11 10 9 24 24 H 1.08992 * 109.47462 * 304.27145 * 12 11 10 25 25 H 1.09004 * 109.46958 * 184.27149 * 12 11 10 26 26 H 1.09004 * 110.74521 * 276.88676 * 14 13 12 27 27 H 1.09000 * 110.75007 * 40.22286 * 14 13 12 28 28 H 1.09006 * 110.68126 * 204.47686 * 15 14 13 29 29 H 1.09004 * 110.82431 * 81.38554 * 15 14 13 30 30 H 1.09003 * 109.86589 * 334.36536 * 18 13 12 31 31 H 1.08999 * 109.86776 * 95.33804 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1795 -3.5854 0.0017 11 6 1.5649 -4.8754 0.0024 12 6 2.6478 -5.9563 0.0030 13 7 3.4190 -5.8759 1.2508 14 6 2.5377 -6.0546 2.4341 15 6 3.5307 -6.4938 3.5390 16 6 4.5156 -7.3782 2.7882 17 8 5.2332 -8.2293 3.2561 18 6 4.4105 -6.9703 1.3324 19 1 -0.4850 0.8401 -0.0004 20 1 0.6245 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8904 22 1 0.9451 -4.9831 -0.8877 23 1 0.9444 -4.9819 0.8922 24 1 3.3138 -5.8039 -0.8462 25 1 2.1810 -6.9383 -0.0730 26 1 2.0543 -5.1147 2.7009 27 1 1.7966 -6.8323 2.2497 28 1 3.0170 -7.0619 4.3146 29 1 4.0388 -5.6305 3.9689 30 1 4.0769 -7.8178 0.7335 31 1 5.3784 -6.6209 0.9728 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396517515.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:51 Heat of formation + Delta-G solvation = -100.385883 kcal Electronic energy + Delta-G solvation = -13981.309698 eV Core-core repulsion = 11455.091957 eV Total energy + Delta-G solvation = -2526.217741 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.00209 -39.04907 -37.82444 -34.91525 -32.85325 -30.36436 -29.16248 -27.53883 -24.47919 -24.06473 -21.75627 -20.80301 -18.59195 -17.64605 -17.35699 -17.13647 -16.56534 -16.24646 -15.86227 -15.21911 -15.08038 -14.70606 -14.65454 -13.89596 -13.49077 -13.24308 -12.98282 -12.76131 -12.64671 -12.45341 -12.33729 -12.14372 -11.75392 -11.24024 -10.82353 -10.63389 -10.14921 -9.41619 -8.29082 -6.40543 0.77469 1.42153 1.46474 1.54850 2.37395 2.82380 3.04942 3.07752 3.25486 3.55300 3.81356 4.14721 4.16207 4.26701 4.43337 4.53407 4.62985 4.68183 4.78368 4.84571 4.91331 4.95702 5.03780 5.23248 5.58483 5.72092 5.93309 6.01755 6.36523 6.60089 6.89571 7.31728 8.82907 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.048021 B = 0.005770 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.941999 B = 4851.808499 C = 5071.252728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.209 3.791 10 O -0.395 6.395 11 C 0.053 3.947 12 C 0.059 3.941 13 N -0.520 5.520 14 C 0.035 3.965 15 C -0.176 4.176 16 C 0.376 3.624 17 O -0.476 6.476 18 C -0.020 4.020 19 H 0.270 0.730 20 H -0.016 1.016 21 H -0.015 1.015 22 H 0.049 0.951 23 H 0.044 0.956 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.179 -13.081 3.272 14.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.191 4.191 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.078 0.922 9 C 0.134 3.866 10 O -0.315 6.315 11 C -0.024 4.024 12 C -0.069 4.069 13 N -0.246 5.246 14 C -0.092 4.092 15 C -0.213 4.213 16 C 0.253 3.747 17 O -0.351 6.351 18 C -0.148 4.148 19 H 0.079 0.921 20 H 0.001 0.999 21 H 0.003 0.997 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.116 0.884 31 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.844 -12.881 3.502 14.200 hybrid contribution -0.725 0.176 -0.177 0.767 sum 4.120 -12.704 3.325 13.763 Atomic orbital electron populations 1.70058 1.07696 1.28602 1.50711 1.25914 0.95912 1.03242 0.94019 0.85278 0.78122 0.76955 0.79327 1.19108 1.20040 1.19118 1.21368 0.94057 0.90976 1.51950 0.92178 1.19779 0.88629 0.84908 0.93264 1.87909 1.34649 1.13849 1.95088 1.22622 0.95433 0.84484 0.99872 1.22344 0.95239 0.96515 0.92787 1.64956 1.14514 1.42385 1.02785 1.23261 0.94877 1.01614 0.89489 1.23084 0.97631 1.01283 0.99327 1.25248 0.78339 0.78600 0.92505 1.90425 1.37730 1.29897 1.77043 1.23325 1.00043 0.95061 0.96415 0.92122 0.99856 0.99739 0.93259 0.93778 0.89675 0.90146 0.90184 0.91220 0.86500 0.86687 0.88370 0.86624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.98 44.33 29.54 68.60 2.03 46.35 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.55 -32.49 9.43 25.60 0.24 -32.25 16 8 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 9 C 0.21 11.64 5.69 71.24 0.41 12.04 16 10 O -0.40 -18.84 10.26 -148.98 -1.53 -20.37 16 11 C 0.05 1.83 5.90 71.98 0.42 2.25 16 12 C 0.06 1.51 5.21 86.30 0.45 1.96 16 13 N -0.52 -13.63 5.32 -887.70 -4.72 -18.36 16 14 C 0.03 0.79 5.37 86.62 0.47 1.25 16 15 C -0.18 -3.42 6.95 30.98 0.22 -3.20 16 16 C 0.38 8.38 8.01 29.85 0.24 8.61 16 17 O -0.48 -13.34 17.99 -1.46 -0.03 -13.37 16 18 C -0.02 -0.42 6.59 85.64 0.56 0.15 16 19 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 20 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 21 H -0.02 -0.87 8.14 -2.38 -0.02 -0.89 16 22 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 23 H 0.04 1.45 6.73 -2.39 -0.02 1.44 16 24 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.08 1.49 7.97 -2.39 -0.02 1.48 16 26 H 0.08 2.17 7.63 -2.39 -0.02 2.15 16 27 H 0.07 1.29 8.00 -2.39 -0.02 1.27 16 28 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.12 2.29 8.14 -2.38 -0.02 2.27 16 30 H 0.10 1.62 7.65 -2.39 -0.02 1.60 16 31 H 0.12 2.36 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -69.04 267.43 0.60 -68.44 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: 1.10 Total: 1.06 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 3.47 Total: -8.29 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -4.44 Total: -73.82 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -1.56 Total: -33.74 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -69.04 0.60 -68.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396517515.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.949 kcal (2) G-P(sol) polarization free energy of solvation -69.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds