Wall clock time and date at job start Mon Mar 30 2020 02:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00230 * 2 1 4 4 H 1.48506 * 109.46639 * 240.00365 * 3 2 1 5 5 H 1.48503 * 109.47203 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47253 * 120.00355 * 3 2 1 7 7 C 1.37885 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00314 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99662 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47119 * 180.02562 * 9 7 2 11 11 C 1.46898 * 111.00192 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47456 * 324.99917 * 11 10 9 13 13 C 1.50700 * 109.47280 * 84.99565 * 11 10 9 14 14 O 1.20831 * 120.00087 * 0.02562 * 13 11 10 15 15 O 1.34234 * 120.00099 * 180.02562 * 13 11 10 16 16 C 1.53002 * 109.47325 * 204.99713 * 11 10 9 17 17 C 1.53781 * 113.61609 * 179.97438 * 16 11 10 18 18 C 1.53781 * 87.08070 * 139.98229 * 17 16 11 19 19 C 1.53786 * 87.17350 * 334.52830 * 18 17 16 20 20 H 0.96994 * 119.99372 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.46974 * 59.99603 * 9 7 2 22 22 H 1.09005 * 109.47070 * 299.99738 * 9 7 2 23 23 H 1.00901 * 111.00279 * 56.04004 * 10 9 7 24 24 H 0.96697 * 117.00145 * 180.02562 * 15 13 11 25 25 H 1.08996 * 112.84723 * 48.80528 * 16 11 10 26 26 H 1.08999 * 113.61181 * 25.43284 * 17 16 11 27 27 H 1.08998 * 113.61680 * 254.52836 * 17 16 11 28 28 H 1.09002 * 113.61445 * 89.11830 * 18 17 16 29 29 H 1.09002 * 113.61408 * 219.93560 * 18 17 16 30 30 H 1.08992 * 113.61675 * 140.02412 * 19 18 17 31 31 H 1.09000 * 113.60973 * 270.92699 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.2056 -3.6157 0.0027 11 6 1.5053 -4.9070 0.0032 12 1 0.5918 -4.8248 0.5923 13 6 1.1573 -5.2904 -1.4120 14 8 1.4619 -4.5628 -2.3274 15 8 0.5090 -6.4403 -1.6558 16 6 2.4112 -5.9783 0.6138 17 6 1.7682 -7.3744 0.6619 18 6 3.1429 -7.9350 0.2607 19 6 3.4282 -6.5674 -0.3821 20 1 -0.4849 0.8400 0.0004 21 1 0.6240 -2.5574 -0.8880 22 1 0.6247 -2.5563 0.8920 23 1 2.8405 -3.5480 0.7839 24 1 0.3078 -6.6435 -2.5796 25 1 2.8537 -5.6689 1.5605 26 1 0.9973 -7.5264 -0.0935 27 1 1.4490 -7.6740 1.6601 28 1 3.7872 -8.1610 1.1104 29 1 3.0881 -8.7525 -0.4582 30 1 4.4480 -6.2159 -0.2262 31 1 3.1102 -6.4992 -1.4225 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399034187.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:53 Heat of formation + Delta-G solvation = -97.249492 kcal Electronic energy + Delta-G solvation = -14530.176806 eV Core-core repulsion = 12004.095069 eV Total energy + Delta-G solvation = -2526.081737 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.69988 -39.26592 -37.33583 -36.39106 -34.48744 -30.56124 -27.52685 -26.44423 -25.20683 -23.86987 -21.88494 -20.30517 -18.98782 -18.65889 -17.32768 -17.26154 -16.61470 -16.09398 -15.80298 -15.19609 -14.75769 -14.65025 -14.06205 -13.47271 -13.35463 -13.06933 -12.85682 -12.70851 -12.49195 -12.40222 -12.12068 -11.61586 -11.37425 -11.29481 -11.12280 -10.98284 -10.67603 -9.25163 -8.24495 -6.35634 1.34017 1.39535 1.44450 1.52061 2.07970 2.39269 3.09061 3.33529 3.68302 3.74746 3.97062 4.07372 4.30756 4.40972 4.42719 4.84439 4.89977 4.98450 5.04808 5.13768 5.18831 5.21434 5.36820 5.56649 5.68393 5.70785 5.96480 6.34165 6.62420 6.83882 7.15096 7.34666 8.87467 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.049260 B = 0.007325 C = 0.006922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.277517 B = 3821.614202 C = 4044.380348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.213 3.787 10 N -0.672 5.672 11 C 0.100 3.900 12 H 0.071 0.929 13 C 0.487 3.513 14 O -0.538 6.538 15 O -0.504 6.504 16 C -0.108 4.108 17 C -0.138 4.138 18 C -0.124 4.124 19 C -0.137 4.137 20 H 0.266 0.734 21 H -0.010 1.010 22 H -0.030 1.030 23 H 0.353 0.647 24 H 0.418 0.582 25 H 0.116 0.884 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.927 -15.893 2.259 16.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.086 3.914 10 N -0.306 5.306 11 C -0.012 4.012 12 H 0.088 0.912 13 C 0.329 3.671 14 O -0.426 6.426 15 O -0.317 6.317 16 C -0.126 4.126 17 C -0.175 4.175 18 C -0.162 4.162 19 C -0.174 4.174 20 H 0.074 0.926 21 H 0.008 0.992 22 H -0.012 1.012 23 H 0.174 0.826 24 H 0.279 0.721 25 H 0.134 0.866 26 H 0.119 0.881 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.036 -15.482 1.732 16.093 hybrid contribution -0.505 1.086 -0.070 1.200 sum 3.531 -14.396 1.663 14.916 Atomic orbital electron populations 1.70086 1.07881 1.28141 1.51442 1.25992 0.95841 1.03535 0.94466 0.85340 0.78091 0.77380 0.79199 1.19780 1.20623 1.18485 1.21490 0.93891 0.91329 1.50775 0.91593 1.19231 0.90482 0.88799 0.92938 1.59922 1.20655 0.99859 1.50203 1.21181 0.98847 0.92417 0.88729 0.91176 1.23679 0.72992 0.77761 0.92698 1.90714 1.51500 1.52628 1.47760 1.84510 1.70618 1.39056 1.37558 1.22874 0.96719 0.93154 0.99886 1.23215 0.98102 0.92732 1.03455 1.22749 0.96836 0.95655 1.00926 1.22964 0.99258 0.97808 0.97409 0.92560 0.99172 1.01204 0.82637 0.72060 0.86622 0.88074 0.89906 0.88626 0.90544 0.91117 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.24 13.29 21.45 0.28 -57.95 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 3 Si 0.98 45.53 29.54 68.60 2.03 47.56 16 4 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 7 C -0.54 -31.82 9.32 25.60 0.24 -31.58 16 8 H 0.07 3.77 7.81 -2.91 -0.02 3.75 16 9 C 0.21 11.91 5.13 85.56 0.44 12.35 16 10 N -0.67 -29.96 5.83 -499.47 -2.91 -32.87 16 11 C 0.10 3.59 2.69 44.17 0.12 3.71 16 12 H 0.07 2.56 7.80 -2.39 -0.02 2.54 16 13 C 0.49 17.96 5.43 71.24 0.39 18.34 16 14 O -0.54 -25.26 16.68 21.95 0.37 -24.89 16 15 O -0.50 -12.98 10.52 -51.46 -0.54 -13.52 16 16 C -0.11 -2.78 3.63 -10.18 -0.04 -2.82 16 17 C -0.14 -2.79 7.41 31.12 0.23 -2.56 16 18 C -0.12 -2.24 8.07 31.12 0.25 -1.99 16 19 C -0.14 -3.40 7.39 31.21 0.23 -3.17 16 20 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 21 H -0.01 -0.63 7.62 -2.39 -0.02 -0.65 16 22 H -0.03 -1.72 8.06 -2.38 -0.02 -1.73 16 23 H 0.35 14.12 8.26 -89.69 -0.74 13.38 16 24 H 0.42 7.25 9.10 -74.06 -0.67 6.57 16 25 H 0.12 2.67 8.00 -2.39 -0.02 2.65 16 26 H 0.10 2.19 5.22 -2.39 -0.01 2.17 16 27 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 28 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 1.65 6.39 -2.39 -0.02 1.64 16 Total: -1.00 -73.96 260.86 1.28 -72.68 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -0.27 Total: 16.26 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 2.32 Total: -7.27 kcal Atomic # 7 Polarization: -88.19 SS G_CDS: -2.63 Total: -90.82 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.17 Total: -38.41 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -73.96 1.28 -72.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399034187.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.567 kcal (2) G-P(sol) polarization free energy of solvation -73.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds