Wall clock time and date at job start Mon Mar 30 2020 02:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.52455 * 108.79572 * 278.40110 * 10 9 7 12 12 C 1.54743 * 109.28395 * 175.68680 * 11 10 9 13 13 H 1.09003 * 114.64994 * 196.39573 * 12 11 10 14 14 C 1.54965 * 105.20128 * 322.92064 * 12 11 10 15 15 C 1.52454 * 111.72010 * 81.08169 * 14 12 11 16 16 C 1.54969 * 111.71904 * 359.97438 * 15 14 12 17 17 H 1.08997 * 114.36623 * 152.81947 * 16 15 14 18 18 C 1.52463 * 108.79082 * 154.99888 * 10 9 7 19 19 S 1.84396 * 101.87328 * 28.29593 * 16 15 14 20 20 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 21 21 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 22 22 H 1.09003 * 108.76096 * 36.65355 * 10 9 7 23 23 H 1.08997 * 109.50437 * 295.63397 * 11 10 9 24 24 H 1.09009 * 109.50333 * 55.74833 * 11 10 9 25 25 H 1.08994 * 109.04084 * 320.48584 * 14 12 11 26 26 H 1.09007 * 108.94330 * 201.60986 * 14 12 11 27 27 H 1.08993 * 109.03957 * 239.40364 * 15 14 12 28 28 H 1.08996 * 108.94406 * 120.52815 * 15 14 12 29 29 H 1.08997 * 109.50187 * 304.25974 * 18 10 9 30 30 H 1.09004 * 109.49765 * 64.36889 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 2.4864 -3.9766 -1.4272 12 6 3.3542 -5.2578 -1.4255 13 1 3.9353 -5.4145 -2.3344 14 6 4.2020 -5.1727 -0.1312 15 6 3.4129 -5.6283 1.0911 16 6 1.9712 -6.0556 0.7164 17 1 1.5313 -6.7920 1.3889 18 6 1.1710 -4.7361 0.6106 19 16 2.1848 -6.6256 -1.0242 20 1 -0.4850 0.8401 0.0004 21 1 0.3557 -2.3880 0.0005 22 1 2.9506 -3.5462 0.6167 23 1 1.6028 -4.1364 -2.0451 24 1 3.0661 -3.1451 -1.8283 25 1 4.5226 -4.1415 0.0167 26 1 5.0823 -5.8059 -0.2424 27 1 3.3655 -4.8096 1.8091 28 1 3.9269 -6.4732 1.5493 29 1 0.8500 -4.4245 1.6045 30 1 0.2974 -4.8900 -0.0230 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403545964.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:40 Heat of formation + Delta-G solvation = 13.470324 kcal Electronic energy + Delta-G solvation = -12778.840561 eV Core-core repulsion = 10700.312867 eV Total energy + Delta-G solvation = -2078.527694 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.00537 -34.18347 -31.56392 -31.43168 -28.76048 -24.97360 -23.93645 -22.77880 -19.76972 -19.14235 -17.43388 -16.57601 -15.91799 -14.31728 -14.14702 -13.34647 -13.23918 -13.09569 -12.68564 -12.58333 -12.26245 -11.69265 -11.49322 -10.93477 -10.81465 -10.74192 -10.26236 -10.20819 -10.05969 -9.88575 -9.69016 -9.32731 -8.88900 -7.36278 -6.97263 -5.78245 -3.07301 2.18757 2.54723 3.41352 3.46475 3.48371 4.51949 4.62010 4.98305 5.08895 5.11732 5.27752 5.42011 5.51426 5.52143 5.70662 5.78375 6.05638 6.07592 6.12546 6.28626 6.29356 6.37530 6.49220 6.61346 6.89804 7.07933 7.66663 8.40096 9.51196 10.09211 10.44054 11.44321 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.054100 B = 0.008583 C = 0.008281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.437056 B = 3261.305890 C = 3380.226658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.167 3.833 11 C -0.129 4.129 12 C -0.026 4.026 13 H 0.115 0.885 14 C -0.121 4.121 15 C -0.121 4.121 16 C -0.024 4.024 17 H 0.119 0.881 18 C -0.120 4.120 19 S -0.332 6.332 20 H 0.255 0.745 21 H 0.383 0.617 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.423 -11.171 0.858 12.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.208 1.208 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.365 5.365 10 C 0.057 3.943 11 C -0.171 4.171 12 C -0.155 4.155 13 H 0.133 0.867 14 C -0.160 4.160 15 C -0.160 4.160 16 C -0.153 4.153 17 H 0.137 0.863 18 C -0.160 4.160 19 S -0.105 6.105 20 H 0.065 0.935 21 H 0.217 0.783 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.063 -11.964 0.205 13.414 hybrid contribution 0.567 1.846 0.505 1.996 sum 6.629 -10.118 0.710 12.117 Atomic orbital electron populations 1.69666 1.05095 1.25641 1.57585 1.24742 0.95500 0.97657 1.03029 0.86220 0.78660 0.83988 0.77494 1.21755 1.20788 1.21774 1.19205 0.90901 0.84100 1.42775 0.91274 1.42463 1.05807 0.99638 1.88638 1.20364 0.94783 0.86275 0.92876 1.22856 0.98818 0.93980 1.01454 1.24638 0.96004 0.94793 1.00059 0.86688 1.22256 0.98494 1.02616 0.92606 1.22273 0.93505 1.01562 0.98640 1.24519 0.98626 0.99365 0.92752 0.86319 1.22359 0.98922 0.92678 1.02036 1.87844 1.62808 1.42876 1.16932 0.93504 0.78319 0.92521 0.91418 0.90962 0.89997 0.91805 0.89994 0.91683 0.90862 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.00 13.06 55.49 0.72 -27.27 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.24 -6.49 9.81 -15.06 -0.15 -6.64 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -17.89 5.09 -53.97 -0.27 -18.16 16 10 C 0.17 3.21 2.21 -68.49 -0.15 3.06 16 11 C -0.13 -2.34 4.93 -26.09 -0.13 -2.46 16 12 C -0.03 -0.38 4.87 -24.78 -0.12 -0.50 16 13 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 14 C -0.12 -1.61 5.21 -25.97 -0.14 -1.75 16 15 C -0.12 -1.57 5.21 -25.97 -0.14 -1.71 16 16 C -0.02 -0.33 4.87 -24.81 -0.12 -0.45 16 17 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16 18 C -0.12 -2.02 4.85 -26.12 -0.13 -2.15 16 19 S -0.33 -5.16 21.98 -107.50 -2.36 -7.52 16 20 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 21 H 0.38 10.18 7.77 -40.82 -0.32 9.86 16 22 H 0.06 1.09 4.23 -51.93 -0.22 0.87 16 23 H 0.07 1.31 8.03 -51.93 -0.42 0.90 16 24 H 0.07 1.40 8.08 -51.92 -0.42 0.98 16 25 H 0.08 1.15 6.77 -51.93 -0.35 0.80 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 1.10 6.77 -51.93 -0.35 0.75 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 LS Contribution 245.00 15.07 3.69 3.69 Total: -1.00 -29.35 245.00 -8.56 -37.91 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -4.15 Total: 7.28 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -1.16 Total: -13.08 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.45 Total: -45.43 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: -5.16 SS G_CDS: -2.36 Total: -7.52 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.35 -8.56 -37.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403545964.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.383 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds