Wall clock time and date at job start Mon Mar 30 2020 02:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.52455 * 108.79572 * 278.40110 * 10 9 7 12 12 C 1.54743 * 109.28395 * 175.68680 * 11 10 9 13 13 H 1.09003 * 114.64994 * 196.39573 * 12 11 10 14 14 C 1.54965 * 105.20128 * 322.92064 * 12 11 10 15 15 C 1.52454 * 111.72010 * 81.08169 * 14 12 11 16 16 C 1.54969 * 111.71904 * 359.97438 * 15 14 12 17 17 H 1.08997 * 114.36623 * 152.81947 * 16 15 14 18 18 C 1.52463 * 108.79082 * 154.99888 * 10 9 7 19 19 S 1.84396 * 101.87328 * 28.29593 * 16 15 14 20 20 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 21 21 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 22 22 H 1.09003 * 108.76096 * 36.65355 * 10 9 7 23 23 H 1.08997 * 109.50437 * 295.63397 * 11 10 9 24 24 H 1.09009 * 109.50333 * 55.74833 * 11 10 9 25 25 H 1.08994 * 109.04084 * 320.48584 * 14 12 11 26 26 H 1.09007 * 108.94330 * 201.60986 * 14 12 11 27 27 H 1.08993 * 109.03957 * 239.40364 * 15 14 12 28 28 H 1.08996 * 108.94406 * 120.52815 * 15 14 12 29 29 H 1.08997 * 109.50187 * 304.25974 * 18 10 9 30 30 H 1.09004 * 109.49765 * 64.36889 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 2.4864 -3.9766 -1.4272 12 6 3.3542 -5.2578 -1.4255 13 1 3.9353 -5.4145 -2.3344 14 6 4.2020 -5.1727 -0.1312 15 6 3.4129 -5.6283 1.0911 16 6 1.9712 -6.0556 0.7164 17 1 1.5313 -6.7920 1.3889 18 6 1.1710 -4.7361 0.6106 19 16 2.1848 -6.6256 -1.0242 20 1 -0.4850 0.8401 0.0004 21 1 0.3557 -2.3880 0.0005 22 1 2.9506 -3.5462 0.6167 23 1 1.6028 -4.1364 -2.0451 24 1 3.0661 -3.1451 -1.8283 25 1 4.5226 -4.1415 0.0167 26 1 5.0823 -5.8059 -0.2424 27 1 3.3655 -4.8096 1.8091 28 1 3.9269 -6.4732 1.5493 29 1 0.8500 -4.4245 1.6045 30 1 0.2974 -4.8900 -0.0230 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403545964.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:40 Heat of formation + Delta-G solvation = -4.136501 kcal Electronic energy + Delta-G solvation = -12779.604050 eV Core-core repulsion = 10700.312867 eV Total energy + Delta-G solvation = -2079.291183 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.35327 -35.99105 -33.28710 -32.78949 -30.41753 -26.62848 -25.22824 -24.54831 -20.93253 -20.61639 -19.28167 -17.99384 -17.42236 -16.12021 -15.53978 -15.08121 -14.58523 -14.50709 -14.25134 -13.88892 -13.71463 -13.16300 -12.85723 -12.79814 -12.50121 -12.16134 -11.99441 -11.72634 -11.69399 -11.31528 -11.18253 -10.94625 -10.53433 -9.01535 -8.60558 -7.93316 -5.22068 0.99809 1.35763 1.47239 1.48534 1.56719 2.55794 3.37135 3.43340 3.68572 3.87178 4.00245 4.04319 4.21723 4.26163 4.36861 4.41646 4.69014 4.80949 4.90228 5.01101 5.06995 5.08505 5.12033 5.24560 5.41384 5.51039 5.56010 6.28431 7.34187 8.10281 8.33334 9.30319 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.054100 B = 0.008583 C = 0.008281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.437056 B = 3261.305890 C = 3380.226658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.970 3.030 4 H -0.287 1.287 5 H -0.268 1.268 6 H -0.299 1.299 7 C -0.234 4.234 8 H 0.078 0.922 9 N -0.739 5.739 10 C 0.164 3.836 11 C -0.123 4.123 12 C -0.017 4.017 13 H 0.135 0.865 14 C -0.120 4.120 15 C -0.121 4.121 16 C -0.011 4.011 17 H 0.145 0.855 18 C -0.116 4.116 19 S -0.353 6.353 20 H 0.249 0.751 21 H 0.369 0.631 22 H 0.065 0.935 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.295 -12.321 1.364 14.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.799 3.201 4 H -0.214 1.214 5 H -0.193 1.193 6 H -0.226 1.226 7 C -0.366 4.366 8 H 0.096 0.904 9 N -0.378 5.378 10 C 0.057 3.943 11 C -0.164 4.164 12 C -0.145 4.145 13 H 0.152 0.848 14 C -0.159 4.159 15 C -0.160 4.160 16 C -0.140 4.140 17 H 0.163 0.837 18 C -0.155 4.155 19 S -0.126 6.126 20 H 0.058 0.942 21 H 0.201 0.799 22 H 0.082 0.918 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.980 -13.159 0.708 15.406 hybrid contribution -0.018 2.126 0.334 2.152 sum 7.962 -11.033 1.042 13.645 Atomic orbital electron populations 1.69829 1.06661 1.25890 1.59843 1.25547 0.96318 1.01050 1.04106 0.85188 0.77755 0.79734 0.77403 1.21424 1.19303 1.22575 1.19597 0.91405 0.85064 1.40484 0.90442 1.42712 1.05384 1.01049 1.88681 1.20609 0.94946 0.84943 0.93835 1.22655 0.98460 0.95482 0.99820 1.24648 0.95560 0.92316 1.02020 0.84761 1.22280 0.99150 1.02801 0.91692 1.22294 0.92733 1.02514 0.98420 1.24612 0.99072 0.98034 0.92244 0.83713 1.22256 0.98353 0.93666 1.01265 1.87984 1.63386 1.42734 1.18487 0.94182 0.79944 0.91755 0.93484 0.92607 0.90831 0.89177 0.90440 0.88923 0.91021 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.66 13.06 21.65 0.28 -59.37 16 2 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 3 Si 0.97 45.80 29.55 68.60 2.03 47.83 16 4 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 7 C -0.23 -12.72 9.81 84.03 0.82 -11.90 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -36.92 5.09 -324.66 -1.65 -38.57 16 10 C 0.16 6.25 2.21 44.63 0.10 6.35 16 11 C -0.12 -4.37 4.93 31.01 0.15 -4.22 16 12 C -0.02 -0.46 4.87 31.86 0.16 -0.30 16 13 H 0.13 3.20 8.14 -2.39 -0.02 3.18 16 14 C -0.12 -2.83 5.21 31.09 0.16 -2.67 16 15 C -0.12 -2.73 5.21 31.09 0.16 -2.57 16 16 C -0.01 -0.28 4.87 31.84 0.16 -0.13 16 17 H 0.15 3.00 8.14 -2.39 -0.02 2.98 16 18 C -0.12 -3.79 4.85 30.99 0.15 -3.64 16 19 S -0.35 -10.22 21.98 -56.49 -1.24 -11.46 16 20 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 21 H 0.37 20.19 7.77 -92.71 -0.72 19.47 16 22 H 0.06 2.38 4.23 -2.39 -0.01 2.37 16 23 H 0.05 1.85 8.03 -2.39 -0.02 1.83 16 24 H 0.06 2.15 8.08 -2.38 -0.02 2.13 16 25 H 0.07 1.88 6.77 -2.39 -0.02 1.87 16 26 H 0.09 1.70 8.14 -2.38 -0.02 1.69 16 27 H 0.08 1.86 6.77 -2.39 -0.02 1.84 16 28 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.06 2.04 8.03 -2.38 -0.02 2.02 16 Total: -1.00 -62.77 245.00 2.15 -60.62 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.41 Total: 24.03 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: 2.33 Total: -23.07 kcal Atomic # 7 Polarization: -96.57 SS G_CDS: -1.37 Total: -97.94 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Atomic # 16 Polarization: -10.22 SS G_CDS: -1.24 Total: -11.46 kcal Total: -62.77 2.15 -60.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403545964.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.481 kcal (2) G-P(sol) polarization free energy of solvation -62.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds